Pinned Repositories
barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
FormicID
CNN-based image classification of AntWeb images
Hemiphot
Analysis of hemispherical images
imgpheno
Image feature extraction in Python
markdown2scorm
Convert markdown documentation to SCORM
mebioda
Course repository for Methods in Biodiversity Analysis
sdmdl
Species Distribution Modelling using Deep Learning
supersmart
Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa
trait-geo-diverse-dl
Ecological Niche Modelling Using Deep Learning
wgs2ncbi
Toolkit for preparing genomes for submission to NCBI
Naturalis Biodiversity Center's Repositories
naturalis/openstack-docs
Documentation resources IT facilities Naturalis
naturalis/HTS-barcode-checker
Pipeline for BLAST analysis of high-throughput DNA sequencing data.
naturalis/de-novo-assembly
Contains shell scripts with example usage of NGS assembly tools for mid-size (insect) genomes.
naturalis/img-classify-all
Aggregator repository for projects related to image classification
naturalis/mycorrhiza
Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification - trait data and analysis
naturalis/3d-cetacean-scapulae
naturalis/apexomes
Scripts and config files for mapping and analyzing exomes of the great apes
naturalis/butterflies
Data and scripts for a research collaboration with the Vlinderstichting
naturalis/Galaxy-Pipeline
Wrappers, scripts and configuration files for running cluster and identification analysis on a Galaxy installation.
naturalis/monophylizer
A web tool to assess monophyly in trees as produced by BOLD systems
naturalis/orchids
Scripts and data to analyze and visualize duplication and divergence of the MADS box genes in Orchids
naturalis/RiseAndFall
Data repository for the Rise and Fall of Species
naturalis/tomatogenome
Project directory for the analysis of ancient tomato DNA
naturalis/lod-hack
Experiments and documentation for the Linked Open Data mini-Hackathon 25-26 April 2016
naturalis/nbclassify-data
Supplementary data for "OrchID: a Generalized Framework for Taxonomic Classification of Images Using Evolved Artificial Neural Networks"
naturalis/rs-lng-plugins
naturalis/asterid-phylo-comp
Project repository to infer bayesian phylogenies of Asterids and to perform comparative analysis of state transitions in vascular morphology
naturalis/biovel-R-client
An example client showing how to connect to biovel services from within R
naturalis/FlorML
naturalis/galaxy-tool-add-blast-to-otutable
naturalis/galaxy-tool-BLAST_wrapper
naturalis/galaxy-tool-count-taxa-per-sample
naturalis/galaxy-tool-cutadapt-docker
naturalis/galaxy-tool-vsearch-pipeline
naturalis/galaxy-tool-worms
naturalis/orchid-transcriptome-pipeline
naturalis/puppet-apexomes
puppet manifest for the apexomes analysis environment
naturalis/puppet-orchid
Puppet module for OrchID
naturalis/RBIEN
Tools for accessing the Botanical Information and Ecology Network (BIEN) database
naturalis/species-delimitation-data
Supplementary data repository for "Algorithmic single-locus species delimitation: effects of sampling effort, variation and non-monophyly in four methods and 1870 species of beetles"