naturalis/supersmart

Issues

• Exporting files from SUPERSMART

  #110 opened 7 years ago by JasonFN
  4

• disabled virtualization in BIOS

  #109 opened 7 years ago by mkandziora
  1

• Travis is failing

  #108 opened 7 years ago by rvosa
  1

• Use of CIPRES functionality

  #98 opened 9 years ago by rvosa
  1

• Beagle not found

  #107 opened 8 years ago by cromanpa94
  3

• bbdecompose minimum number of Markers

  #100 opened 8 years ago by cromanpa94
  7

• Constraint trees in bbinfer

  #104 opened 8 years ago by hettling
  4

• Marker for only one single taxon in Supermatrix

  #102 opened 8 years ago by hettling
  2

• rank option for smrt bbmerge

  #106 opened 8 years ago by hettling
  0

• Memory problems when threading in a VM

  #105 opened 8 years ago by rvosa
  0

• topological comparison with Open Tree of Life

  #96 opened 8 years ago by rvosa
  2

• Clean up examples

  #103 opened 8 years ago by hettling
  0

• BBreroot error "killed"

  #99 opened 8 years ago by hettling
  1

• enable biogeographic analyses

  #95 opened 8 years ago by hettling
  1

• "--append" option for smrt bbinfer with ExaBayes inference

  #97 opened 8 years ago by hettling
  2

• Passing a single tree file to smrt cladegraft

  #101 opened 8 years ago by hettling
  0

• Fine-tuning the simulations

  #90 opened 8 years ago by rvosa
  2

• Better storage location for intermediate files

  #94 opened 9 years ago by hettling
  1

• error message when working directory not writable

  #93 opened 9 years ago by hettling
  0

• Running without backbone tree

  #91 opened 9 years ago by fernandafreitas
  2

• Partitioning of supermatrix

  #92 opened 9 years ago by rvosa
  0

• transfering data to supersmart

  #89 opened 9 years ago by fernandafreitas
  1

• Clade trees having less than two exemplar species

  #88 opened 9 years ago by hettling
  2

• parse error in `smrt-utils plot`

  #87 opened 9 years ago by hettling
  4

• weird bbdecompose / cladegraft behavior

  #86 opened 9 years ago by rvosa
  4

• Clademerge incorrectly composes output file name

  #84 opened 9 years ago by rvosa
  1

• Speeding up re-rooting

  #74 opened 9 years ago by rvosa
  7

• Increase transparency about excluded species

  #79 opened 9 years ago by hettling
  1

• Cladegraft corner case

  #81 opened 9 years ago by rvosa
  1

• "Marker graph"

  #83 opened 9 years ago by rvosa
  1

• Constrained searches

  #82 opened 9 years ago by rvosa
  0

• Serious bug in bbdecompose

  #80 opened 9 years ago by rvosa
  0

• dangerous NCBI queries when retrieving marker names

  #78 opened 9 years ago by hettling
  4

• smrt classify needed?

  #77 opened 9 years ago by hettling
  2

• Taxon names with parentheses in database

  #76 opened 9 years ago by hettling
  2

• Refactoring superclustering for clade analysis

  #75 opened 9 years ago by rvosa
  1

• Add SUPERSMART to ELIXIR registry

  #73 opened 9 years ago by rvosa
  2

• Better description of markers in marker table

  #70 opened 10 years ago by hettling
  3

• Missing index on ci_gi.ti_of_gi

  #69 opened 10 years ago by rvosa
  4

• Manual with worked example and troubleshooting

  #62 opened 10 years ago by diogoprov
  21

• Better description of required vs optional options for the subcommands

  #72 opened 10 years ago by hettling
  0

• Galaxy wrappers

  #71 opened 10 years ago by rvosa
  0

• v0.1.20 should install ~/.bash_login

  #66 opened 10 years ago by rvosa
  0

• *BEAST issues

  #67 opened 10 years ago by rvosa
  5

• How can it be that a clade tree has only one of the two exemplars?

  #68 opened 10 years ago by rvosa
  3

• bbcalibrate dies sometimes

  #65 opened 10 years ago by rvosa
  3

• extract voucher numbers

  #63 opened 10 years ago by diogoprov
  5

• Progress bar for the most time-consuming tasks?

  #64 opened 10 years ago by diogoprov
  1

• Exabayes now broken on vagrant box

  #60 opened 10 years ago by rvosa
  6

• pre-compile executables

  #61 opened 10 years ago by rvosa
  0