function to calculate overlap with labelfield

Question

function to calculate overlap with labelfield

jefferis opened this issue 10 years ago · 5 comments

Would like either a function or simple examples showing how to calculate overlap with a label field.

Should we be including the VFB label field in e.g. JFRC2, FCWB, T1 and IS2 space?

Answer 1 · 2014-06-19T17:26:07.000Z

Incidentally we could translate overlap from the space of the data collection to JFRC2 space by the use of Jacobian determinants for the bridging registration.

Answer 2 · 2014-07-16T12:44:31.000Z

Probably belongs in nat.templatebrains or even in nat at this point

Answer 3 · 2014-08-02T11:11:52.000Z

At its simplest, this would take a thresholded image and a label field and return a data.frame with counts of each label and its overlap.

Answer 4 · 2014-08-03T07:55:20.000Z

OK I think this should be implemented as nat::cmtk.statistics (translating nat.as::CMTKStatistics) + a function in nat.templatebrains that coordinates thesholding etc.

Answer 5 · 2016-01-26T16:15:57.000Z

So the status of this is that nat now has a nat::cmtk.statistics function as of natverse/nat@8d2d7c6 but the other part of the solution (coordinating the thresholding) is not yet defined or implemented.