jefferis
develops @natverse, directs collaborative @flyconnectome group at Dept of Zoology, joint head of Division of Neurobiology @ MRC LMB.
MRC Laboratory of Molecular BiologyCambridge, United Kingdom
Pinned Repositories
cmtk
Unofficial git clone of Computational Morphometry Toolkit (CMTK)
fiji-cmtk-gui
Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ
gphys
R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro
IgorR
R package to load Igor Pro waves (ibw) and experiment files (pxp) in R
nabor
R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions
readobj
R package providing fast reader for Wavefront OBJ 3D scene files
coconatfly
Comparative Connectomics of Public and In Progress Drosophila Datasets
nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
nat.nblast
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
neuprintr
R client utilities for interacting with the neuPrint connectome analysis service
jefferis's Repositories
jefferis/nabor
R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions
jefferis/gphys
R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro
jefferis/cmtk
Unofficial git clone of Computational Morphometry Toolkit (CMTK)
jefferis/readobj
R package providing fast reader for Wavefront OBJ 3D scene files
jefferis/IgorR
R package to load Igor Pro waves (ibw) and experiment files (pxp) in R
jefferis/RANN2
Fast Nearest Neighbour Search (Rcpp wrapper for libANN)
jefferis/vfbr
R Package to Access the Virtual Fly Brain project API
jefferis/bmp
A simple R package to read Windows BMP format images
jefferis/manifoldreduction
Manifold Dimension Reduction after Chigirev and Bialek
jefferis/nat.ants
Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools
jefferis/Rvcg
R-package providing mesh manipulation routines from VCGLIB
jefferis/cachem
Key-value caches for R
jefferis/cmtkr
R wrapper package for the Computational Morphometry Toolkit (CMTK)
jefferis/dash
RStudio Addin to Run a Selection as a Background Job
jefferis/flynblastscores
R package to provide RESTful interface via opencpu to NBLAST scores for fly neurons
jefferis/gscraper
Basic web scraping - designed to generate local cache of remote website
jefferis/gsignal
R implementation of the Octave signal package
jefferis/jefferis.github.io
user level github pages site
jefferis/Morpho
R-package providing a toolset for (3D-based) Geometric Morphometrics
jefferis/neo2R
This R package provides simple connectors for querying neo4j graph databases.
jefferis/paperutils
R package with utility functions to support preparation of journal articles
jefferis/qs
Quick serialization of R objects
jefferis/r-natverse
Batteries included docker image for full natverse
jefferis/razip
Efficient Random Access to R Objects Stored in Large Zip Files
jefferis/rJava
R to Java interface
jefferis/RSwitch
🎛 A small menubar app that allows you to switch between R versions quickly (if you have multiple versions of R framework installed).
jefferis/treedata-book
:books: a complete reference book for treeio, tidytree and ggtree packages
jefferis/xtensor-r
R bindings for xtensor
jefferis/Xtensor.R
R package for xtensor-r
jefferis/zip
Platform independent zip compression via miniz