naumenko-sa

Pinned Repositories

bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Language:Python994 86 3.1k353
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
Language:Python257 26 148158
bioinf_posibnyk_public
8 3 01
bioscripts
a bucket of bioinformatics scripts
Language:Perl13 3 14
cre
excel report generation using data from bcbio variant2 germline pipeline
Language:Shell6 4 15
crg
clinical reseach genome scripts
Language:Python3 2 11
crt
transcriptome analysis scripts (historically clinical research transcriptome)
Language:HTML4 3 24
MendelianRNA-seq
Language:Python1 2 01
umic
barcode counting for inDrops3 single cell RNA-seq protocol
Language:C++1 2 00

naumenko-sa's Repositories

naumenko-sa/MendelianRNA-seq
Language:Python1 2 01
naumenko-sa/bcbio.coverage
utils functions for exome coverage plots as quality controls
Language:Python1 0
naumenko-sa/eggan-es_derived_motor_neuron_knockdown-rnaseq-human
ALS implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair
Language:HTML1 0
naumenko-sa/gemini
a lightweight db framework for disease and population genetics.
Language:Python1 0
naumenko-sa/geneimpacts
prioritize effects of variant annotations from VEP, SnpEff, et al.
Language:Python2 0
naumenko-sa/seqcluster
small RNA analysis from NGS data
Language:HTML1 0
naumenko-sa/vcf2db
create a gemini-compatible database from a VCF
Language:Python2 0