Pinned Repositories
ACT_paper
Scripts used for the ACT paper
Arc-well
Scripts for the Arc-well paper
CellTrek
copykat
copykit
Toolkit for single-cell copy number analysis
CopyKit-UserGuide
This is the User Guide for the CopyKit R Package
CSHL_workshops
HumanBreastCellAtlas
Repository for codes for the HBCA paper
MVA_CNA
Moving average to calculate copy numbers from 10X RNAseq
scopit
navinlabcode's Repositories
navinlabcode/copykat
navinlabcode/CellTrek
navinlabcode/HumanBreastCellAtlas
Repository for codes for the HBCA paper
navinlabcode/copykit
Toolkit for single-cell copy number analysis
navinlabcode/ACT_paper
Scripts used for the ACT paper
navinlabcode/scopit
navinlabcode/CSHL_workshops
navinlabcode/normalbreastDNA
navinlabcode/Arc-well
Scripts for the Arc-well paper
navinlabcode/CopyKit-UserGuide
This is the User Guide for the CopyKit R Package
navinlabcode/MVA_CNA
Moving average to calculate copy numbers from 10X RNAseq
navinlabcode/CNV_pipeline
navinlabcode/scquantum
navinlabcode/snubar_atac_scripts
Scripts (demultiplexing) used in the SNuBar-ATAC manuscript
navinlabcode/ESO
navinlabcode/HumanBreastCellAtlas.github.io
The Human Breast Cell Atlas results.
navinlabcode/navinlabcode.github.io
navinlabcode/PRECISE_paper
code for generating the figures for the PRECISE trial paper
navinlabcode/CopyKit_paper
Scripts to reproduce the figures from the CopyKit manuscript
navinlabcode/MissionBio_TNBC_paper
Code for the Mission Bio TNBC paper
navinlabcode/pan_cancer_paper
Pan-cancer CNA paper
navinlabcode/pmultinom
navinlabcode/PRECISION_clonality_sc
Scripts to generate plots used for scDNA precision clonality sample
navinlabcode/RcppML
Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
navinlabcode/tnbc-chemo
Decoding the Archetypes and Ecotypes of Triple-Negative Breast Cancer in Response to Chemotherapy
navinlabcode/vignettes
navinlabcode/wellDA-seq
Single cell genome and epigenome co-profiling reveals hardwiring and plasticity in breast cancer