Pinned Repositories
abemus
ABEMUS: platform specific and data informed detection of somatic SNVs in cfDNA
abemus_models
abemus2
abemus_raw_code
Detection of somatic SNVs in cfDNA
crispr
expr_chromothripsis
freebayes_snakemake
snakemake workflow for Freebayes
generate_xclone_inputs
tcga_rna_dna
whatshap_phasing
phasing genomic variants using WhatsHap on Illumina WGS and Nanopore data
ncasiraghi's Repositories
ncasiraghi/generate_xclone_inputs
ncasiraghi/whatshap_phasing
phasing genomic variants using WhatsHap on Illumina WGS and Nanopore data
ncasiraghi/abemus2
ncasiraghi/abemus_raw_code
Detection of somatic SNVs in cfDNA
ncasiraghi/crispr
ncasiraghi/expr_chromothripsis
ncasiraghi/freebayes_snakemake
snakemake workflow for Freebayes
ncasiraghi/tcga_rna_dna
ncasiraghi/gatk_haplotypecaller
snakemake workflow for GATK HaplotypeCaller
ncasiraghi/infercnv_hipo
apply inferCNV on multiple myeloma samples (DKFZ HIPO project)
ncasiraghi/infercnv_MB
Set inputs and apply inferCNV on Medulloblastoma samples
ncasiraghi/preprocessing_data_Gandellini
pre-process Haloplex WES PE Illumina data
ncasiraghi/sc10x_dna_code
Analysis of single cell data from 10x CNV assay
ncasiraghi/scriptoolbox
ncasiraghi/scrna_vs_scdna
Integration of scRNA-seq and scDNA-seq data from 10x assays
ncasiraghi/wes_plasma_project