/alphabetsoup

fix alphabet and gene length problems in protein FASTA files

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

alphabetsoup fixes problems with protein FASTA files: +--------------------------+------------------------+ | Problem | Fix | +--------------------------+------------------------+ | Unknown character | Replaces with 'X' | +--------------------------+------------------------+ | Stop/ambigous at ends | Trims | +--------------------------+------------------------+ | Stop/ambiguous in middle | Optionally fragments | +--------------------------+------------------------+ | Too short | Deletes record | +--------------------------+------------------------+

+-------------------+------------+------------+ | Latest Release | Python package | | +-------------------+------------+ + | GitHub | GitHub repository | | +-------------------+------------+ + | License | License terms | | +-------------------+------------+ + | Documentation | Documentation Server | | +-------------------+------------+ + | Travis Build | Travis CI | | +-------------------+------------+ + | Coverage | Codecov.io test coverage | | +-------------------+------------+ + | Pythonicity | landscape.io status| | +-------------------+------------+ + | Code Grade | Codacy.io grade | | +-------------------+------------+ + | Dependencies | pyup.io dependencies | | +-------------------+------------+ + | Issues | Issues reported | | +-------------------+------------+ + | Kanban | Powered by ZenHub | | +-------------------+------------+------------+