Pinned Repositories
BioMaptools
Tools for Processing Biological Mapping Technologies
blastxmlparser
Fast big data XML parser and library, written in Ruby
java
Various Java apps written at NCGR for a variety of purposes.
lis_cmap
templates and htdocs for cmap.comparative-legumes.org
lis_sequence_search
LIS sequence search
quorum
A flexible bioinformatics search tool.
rbpa
Transcriptome Assembly Pipeline BPA2.1.0
seqtools2
FASTX tools for manipulation, filtering, and sequence statistics
tapioca
Tapioca is a pipeline for Illumina Casava 1.8 genome analyzer/hiseq data.
UMI-analysis
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
National Center for Genome Resources's Repositories
ncgr/UMI-analysis
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
ncgr/java
Various Java apps written at NCGR for a variety of purposes.
ncgr/lis_sequence_search
LIS sequence search
ncgr/seqtools2
FASTX tools for manipulation, filtering, and sequence statistics
ncgr/BioMaptools
Tools for Processing Biological Mapping Technologies
ncgr/CornBERT
An implementatin of the CornBERT model
ncgr/dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
ncgr/aakbar
Amino-Acid k-mer Tool
ncgr/alphabetsoup
fix alphabet and gene length problems in protein FASTA files
ncgr/BAli-Phy
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
ncgr/biofletch
Interchange of biological sequences and metadata between Apache Arrow and FASTA files
ncgr/cdbg
A dynamic library and program for constructing and interacting with compressed de Bruijn graphs for pangenome analysis.
ncgr/Coworking
NCGR Coworking Studios
ncgr/Cyprinodon
Pilot Project NNMC Cvar, Cbron, Cdes
ncgr/Dask_Interpro
Dask Worker Processing of Interpro, with Resource Control
ncgr/DE-Bookdown
Differential Expression Workshop
ncgr/DE-workshop
ncgr/GFF3toolkit
Python programs for processing GFF3 files
ncgr/hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
ncgr/lis_gene_families
ncgr/Metagenomics-Bookdown
ncgr/MUTTools
Tools for Visualizing and Manipulating Mutation Annotation Data
ncgr/ncgr-INBRE-Bookdown
ncgr/NIGMS-Sandbox-Pangenomics-Module
ncgr/NISE
Summer Internship with NMSU
ncgr/NISE-bioinformatics
ncgr/phapanmine
Phaseolus pangenome mine (not an LIS mine)
ncgr/Polymer_Components
A Test Repository for Web Component Standards
ncgr/react-chatbots
Chatbots built using React
ncgr/SC_Best_Practices