Pinned Repositories
BioMaptools
Tools for Processing Biological Mapping Technologies
blastxmlparser
Fast big data XML parser and library, written in Ruby
java
Various Java apps written at NCGR for a variety of purposes.
lis_cmap
templates and htdocs for cmap.comparative-legumes.org
lis_sequence_search
LIS sequence search
quorum
A flexible bioinformatics search tool.
rbpa
Transcriptome Assembly Pipeline BPA2.1.0
seqtools2
FASTX tools for manipulation, filtering, and sequence statistics
tapioca
Tapioca is a pipeline for Illumina Casava 1.8 genome analyzer/hiseq data.
UMI-analysis
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
National Center for Genome Resources's Repositories
ncgr/tapioca
Tapioca is a pipeline for Illumina Casava 1.8 genome analyzer/hiseq data.
ncgr/quorum
A flexible bioinformatics search tool.
ncgr/blastxmlparser
Fast big data XML parser and library, written in Ruby
ncgr/H5jruby
HDF5 for JRuby
ncgr/lis_cmap
templates and htdocs for cmap.comparative-legumes.org
ncgr/lis_species
LIS species sites
ncgr/qev
Quality Evidence
ncgr/rubycas-server
Provides a single sign-on solution for web applications, implementing the server-end of JA-SIG's CAS protocol.
ncgr/seqqle
Ruby on Rails NCBI Blast Application
ncgr/lis_chado
LIS changes of schema and loader scripts from Chado
ncgr/lis_search
LIS search
ncgr/Sample_module
Implementing views for custom tables
ncgr/tripal_biomaterial
ncgr/tripal_search
Search and blat pages implemented the drupal way, requires iframe fixes. Implementation of POST method for blat is absent