ncherric

SAE-IBS

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

benchpress

A Snakemake workflow to run and benchmark structure learning algorithms for probabilistic graphical models.

bioconda-recipes

Conda recipes for the bioconda channel.

Iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

Odyssey

Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

snakemake

Pull request for adding information in changelog about the deprecated time format with human friendly time format feature

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

ncherric/Iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

ncherric/ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

ncherric/benchpress

A Snakemake workflow to run and benchmark structure learning algorithms for probabilistic graphical models.

ncherric/bioconda-recipes

Conda recipes for the bioconda channel.

ncherric/Odyssey

Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data

ncherric/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

ncherric/snakemake

Pull request for adding information in changelog about the deprecated time format with human friendly time format feature

ncherric/staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks