Pinned Repositories
about
Niu Du, Ph.D. – A personal website dedicated to sharing insights, research, and fascinating discoveries.
CITE-count
Read and QC totalseq A fastq files and export count ADT matrix, merge with sc RNASeq data and export to scanpy
Cobra_Flux_model
Dap-Seq-pipeline
TF-DNA-binding assay analysis pipeline
Deep_learning
LJI_RNA_SEQ_PIPELINE_V2
Snakemake based RNA-Seq QC pipeline for cloud/cluster implementation
MetaGenomics-vis-pipeline
Functions for creating diversity plots using plotly
Oceanic_database
Major oceanic 16S/18S databases in qiime2 format and pre-trained classifier
Random_useful_scripts
ndu-bioinfo's Repositories
ndu-bioinfo/Dap-Seq-pipeline
TF-DNA-binding assay analysis pipeline
ndu-bioinfo/Oceanic_database
Major oceanic 16S/18S databases in qiime2 format and pre-trained classifier
ndu-bioinfo/Deep_learning
ndu-bioinfo/MetaGenomics-vis-pipeline
Functions for creating diversity plots using plotly
ndu-bioinfo/about
Niu Du, Ph.D. – A personal website dedicated to sharing insights, research, and fascinating discoveries.
ndu-bioinfo/CITE-count
Read and QC totalseq A fastq files and export count ADT matrix, merge with sc RNASeq data and export to scanpy
ndu-bioinfo/Cobra_Flux_model
ndu-bioinfo/conos
Clustering on Network of Samples
ndu-bioinfo/LJI_RNA_SEQ_PIPELINE_V2
Snakemake based RNA-Seq QC pipeline for cloud/cluster implementation
ndu-bioinfo/Random_useful_scripts
ndu-bioinfo/coursera-Applied-Data-Science-with-Python
Repo for coursera specialization Applied Data Science with Python by University of Michigan
ndu-bioinfo/datasciencecoursera
datascience coursera
ndu-bioinfo/Deep-learning-Expression-pattern
ndu-bioinfo/deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
ndu-bioinfo/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
ndu-bioinfo/Functions
Functions defined for a variety of projects
ndu-bioinfo/IBM_capstone
ndu-bioinfo/insight_data_challenge
ndu-bioinfo/MLE-feature-extraction
ndu-bioinfo/nbconvert
Jupyter Notebook Conversion
ndu-bioinfo/nextflow-jupyter
Jupyter with nextflow embedding
ndu-bioinfo/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
ndu-bioinfo/Pangolin
Pangolin is a deep-learning method for predicting splice site strengths.
ndu-bioinfo/pep-detective
ndu-bioinfo/pHOS
ndu-bioinfo/ProgrammerResumeTemplate
一个简洁使用的程序员简历模板（A simple, clear and effective resume template for programmers.）
ndu-bioinfo/Python_study
ndu-bioinfo/Qiime2_swarm_pipeline
For running qiime using SWARM output
ndu-bioinfo/RNA_SEQ_PIPELINE
RNA-seq data processing and QC
ndu-bioinfo/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.