ndu-bioinfo

ndu-bioinfo's Stars

• ant-design/ant-design

  An enterprise-class UI design language and React UI library

  Language:TypeScript93k24230.7k50.6k

• vllm-project/vllm

  A high-throughput and memory-efficient inference and serving engine for LLMs

  Language:Python33.3k2715.8k5.1k

• unclecode/crawl4ai

  🚀🤖 Crawl4AI: Open-source LLM Friendly Web Crawler & Scraper

  Language:HTML22.3k1263441.6k

• RustPython/RustPython

  A Python Interpreter written in Rust

  Language:Rust19.5k1711.1k1.3k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13.1k2288702.3k

• EpistasisLab/tpot

  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  Language:Python9.8k2899221.6k

• TeamWiseFlow/wiseflow

  Wiseflow is an agile information mining tool that extracts concise messages from various sources such as websites, WeChat official accounts, social platforms, etc. It automatically categorizes and uploads them to the database.

  Language:Python5.5k58162975

• deep-learning-with-pytorch/dlwpt-code

  Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.

  Language:Jupyter Notebook4.8k1111092k

• benedekrozemberczki/awesome-graph-classification

  A collection of important graph embedding, classification and representation learning papers with implementations.

  Language:Python4.8k21710741

• unionai-oss/pandera

  A light-weight, flexible, and expressive statistical data testing library

  Language:Python3.5k22911314

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.3k17111619

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k71202206

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k29442159

• plotly/dash-recipes

  A collection of scripts and examples created while answering questions from the greater Dash community

  Language:Python1.1k6027300

• PaddlePaddle/PaddleHelix

  Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

  Language:Python1k27123228

• kyegomez/AlphaFold3

  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

  Language:Python766266103

• SanDiegoMachineLearning/bookclub

  Notes and links from the book club meetings

  Language:Jupyter Notebook519402108

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python49636501192

• gecko984/supervenn

  supervenn: precise and easy-to-read multiple sets visualization in Python

  Language:Python331103223

• brentp/goleft

  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

  Language:Go217176825

• mahulchak/quickmerge

  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

  Language:C++202127332

• ISUgenomics/bioinformatics-workbook

  Bioinformatics Workbook repository

  Language:HTML17817890

• divonlan/genozip

  A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

  Language:C16112512

• yeshwanthlm/YouTube

  YouTube

  9844220

• russellromney/brain-plasma

  Shared-memory Python object namespace with Apache Plasma. Built because of Plotly Dash, useful anywhere.

  Language:Python84101511

• fengwangPhysics/matplotlib-chord-diagram

  plot chord diagram with matplotlib

  Language:Python836425

• StatProofBook/StatProofBookTools

  Tools for The Book of Statistical Proofs

  Language:TeX837010

• sandberg-lab/Smart-seq3

  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).

  Language:Python5041410

• mxwang66/depthpred

  A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence

  22126

• wedeling/sparse_grid_tutorial

  Language:Jupyter Notebook2200