PaddlePaddle/PaddleHelix

Issues

• pip install paddlehelix fails due to sklearn deprecation

  #295 opened 7 days ago by AndyLiu-121
  0

• HelixFold在Ultra-Long Monomer Protein Demo上推理出错

  #294 opened 8 days ago by zepingWww
  0

• Requirement.txt for helixdock and examples

  #289 opened 20 days ago by lifecodetest
  4

• Posebuster dataset demo in HelixDock

  #292 opened 17 days ago by ivandon15
  1

• hiv和muv数据集

  #281 opened a month ago by zoey731
  1

• 运行helixfold-single-inference.py 报错

  #279 opened 2 months ago by Linzy19
  1

• pip install paddlehelix报错

  #280 opened 2 months ago by wdi-nancy
  2

• Encountered ImportError when using HelixFold-Single.

  #262 opened 4 months ago by ZheJiangLabCode
  1

• 运行脚本train_cls.py报错，AttributeError: type object 'paddle.fluid.libpaddle.VarBase' has no attribute '__getitem__'

  #276 opened 6 months ago by ShaunZhang7
  0

• 运行脚本train_cls.py报错：AttributeError: type object 'paddle.fluid.libpaddle.VarBase' has no attribute '__getitem__'

  #275 opened 6 months ago by ShaunZhang7
  0

• paddlehelix安装问题

  #273 opened 6 months ago by ShaunZhang7
  4

• 加载GEM pretrain model提示模型shape和权重shape不一致

  #274 opened 6 months ago by wjybill
  1

• ask for the generation of processed.pkl in the geomGCL

  #268 opened 9 months ago by Yanara-Tian
  1

• Get distogram prediction from Helix-single

  #272 opened 7 months ago by ShuhaoGithub
  0

• 权重

  #270 opened 7 months ago by luyao-cv
  0

• 运行tutorial的时候出现与cuda有关的error

  #269 opened 7 months ago by wjybill
  1

• how to inference with DCU

  #266 opened 9 months ago by lijxgit
  0

• 运行JTVAE的代码，preprocess没有问题，训练代码报错，使用的是你们官方提供的数据集

  #264 opened 10 months ago by Skyright7
  1

• pip install paddlehelix

  #221 opened 2 years ago by sightsIndeep
  7

• JT_VAE案例中没有指定输入一个simles去生成的案例，麻烦这个有参考吗

  #236 opened 2 years ago by lonngxiang
  1

• GEM 数据处理很慢

  #240 opened a year ago by 545487677
  2

• Get Embedding Layer

  #249 opened a year ago by karthikjetty
  2

• GEM pretrain model.

  #253 opened a year ago by karthikjetty
  1

• GEM does't work

  #256 opened a year ago by eshinesimida
  2

• when will Code for "Multimodal Pre-Training Model for Sequence-based Prediction of Protein-Protein Interaction" be released?

  #261 opened a year ago by linuxonly801
  0

• 使用命令 pip install --upgrade git+https~ 时候会出现sklearn is depreciation use scikit-learn instead

  #260 opened a year ago by ikunpy
  0

• 在使用paddlehelix安装时，sh scripts/build.sh，会出现make: *** makefile。 停止。的错误

  #259 opened a year ago by ikunpy
  0

• Could you please provide the CASP14 test set which you evaluated on?

  #252 opened a year ago by JoeyL12138
  2

• retrosynthesis module didn't work properly

  #247 opened a year ago by biotech7
  0

• I have a question regarding GEM-2 model, PCQM4Mv2 dataset

  #243 opened a year ago by Sangyeup
  3

• 为什么在用rdkit生成3D分子数据时使用最低能量的呢？

  #244 opened a year ago by KTJ10086
  0

• 模型预测的蛋白质其中的每个氨基酸结果都特别大，如1028164807，要转换到对应的字母时发生list index out of range

  #239 opened a year ago by wcf653422590
  10

• How GEM2 use 3d information

  #225 opened 2 years ago by tiendatnguyen-vision
  3

• 跑HelixFold-Single Inference demo时遇到问题

  #216 opened 2 years ago by zytskymaker
  6

• 运行 SD VAE 的reconstruct_zinc.py报错

  #237 opened 2 years ago by lonngxiang
  0

• Question about the Branch Parallelism in Evoformer

  #217 opened 2 years ago by zyeric
  2

• Can I find code for LIT-PCBA dataset's 3D coordinates generation?

  #232 opened 2 years ago by Sangyeup
  1

• 曙光超算上安装Helixfold遇到PaddlePaddle NotFoundError: Operator fused_gate_attention does not have kernel for {data_type[float]; data_layout[Undefined(AnyLayout)]; place[Place(cpu)]; library_type[PLAIN]}.

  #231 opened 2 years ago by xiamr
  1

• paddlepaddle_gpu-0.0.0-cp37-cp37m-linux_x86_64.whl 这个包安装在AMD EPYC 7742平台上发生指令集异常

  #230 opened 2 years ago by xiamr
  1

• Get a valueError when I try to run the helixfold-single.

  #219 opened 2 years ago by yangjinhaoo
  10

• `Model` object has no attribute decode in HelixFold

  #218 opened 2 years ago by bernym12
  2

• pcqm4m-v2中valid和test的3D结构信息如何获取？

  #211 opened 2 years ago by Ranceeeee
  4

• 请问一下GeomGCL的代码中，数据处理相关的代码块在哪里呢，我运行到此处下不去了

  #212 opened 2 years ago by wkwangkewkwk
  1

• Use newer OpenMM

  #213 opened 2 years ago by peastman
  2

• helixfold-single issue

  #215 opened 2 years ago by jlspzw
  9

• 请问能走pickle不走搜索进行蛋白质结构预测吗

  #209 opened 2 years ago by wangchenghaonl
  13

• 请问GEM中微调的shell文件此处运行错误怎么修改

  #210 opened 2 years ago by wkwangkewkwk
  1

• 运行helixfold_single_inference.py 报错

  #205 opened 2 years ago by xiong3134
  7

• "Illegal instruction"

  #206 opened 2 years ago by sokrypton
  0

• ModuleNotFoundError: No module named 'pahelix.featurizers.gem_featurizer'

  #202 opened 2 years ago by WeixuanXiong
  1