rna-structure-prediction
There are 30 repositories under rna-structure-prediction topic.
PaddlePaddle/PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
RosettaCommons/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Lattice-Automation/seqfold
nucleic acid folding
lbcb-sci/RiNALMo
RiboNucleic Acid (RNA) Language Model
XieResearchGroup/Physics-aware-Multiplex-GNN
Code for our Nature Scientific Reports paper "A universal framework for accurate and efficient geometric deep learning of molecular systems"
yikunpku/RNA-MSM
Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.
s-will/LocARNA
Alignment of RNAs
mjendrusch/nimna
DNA/RNA folding in Nim
marcom/ViennaRNA.jl
Julia interface to ViennaRNA for RNA structure prediction and analysis
mmagnus/emacs-pdb-mode
pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.
mmagnus/EvoClustRNA
RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
Urinx/RNAWorld
A gym environment for the research which apply the reinforcement learning algorithm to the RNA structure prediction
csfoo/contrafold-se
CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data
mmagnus/RNA-Puzzles-Standardized-Submissions
Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip
Bhattacharya-Lab/lociPARSE
locality-aware invariant Point Attention-based RNA ScorEr
marcom/LinearFold.jl
Julia interface to LinearFold RNA structure prediction programs: LinearFold, LinearPartition, LinearSampling, and LinearTurboFold
HosnaJabbari/Iterative-HFold
RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding
HosnaJabbari/CCJ
MFE method for predicting the psuedoknotted secondary structures of RNA sequences.
HosnaJabbari/DinoKnot
RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding
rooselvelt6/UCISAHUAPA
Agente Inteligente Basado en Redes Neuronales Artificiales para la Identificación de los determinantes de la estadía de los pacientes de la UCI del HUAPA de Cumaná, estado Sucre
cas-bioinf/rboAnalyzer
Tool for analysing BLAST output for ncRNA sequences
ChevronOne/Tools-For-Computational-Biology
Tools For Computational Biology
gtDMMB/GTFoldPython
Python bindings to use the historical GTFold library natively in the RNADB construction script and natively with Python3. See the WIKI pages for documentation and installation notes.
HosnaJabbari/HFold
RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding
JLP-BioInf/rnaCrosslinkOO
Repo for the comradesOO R package. Designed for the analysis of RNA structural data obtained through RNA cross-linking and high-throughput sequencing experiments
Neo-Panther/RNA-Secondary-Visualizer
Visualizes the secondary structure of RNA using Verna
abondrn/polymerust
RNA folding and codon optimization in pure Rust
dmancilla85/java-mvn-laslo
Maven project for the bioinformatic application LoopMatcher (aka LASLO).