protein-structure-prediction
There are 72 repositories under protein-structure-prediction topic.
lucidrains/alphafold3-pytorch
Implementation of Alphafold 3 from Google Deepmind in Pytorch
PaddlePaddle/PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
RosettaCommons/PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Urinx/alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
aqlaboratory/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
FreshAirTonight/af2complex
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
zjunlp/OntoProtein
[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
ml4bio/Dense-Homolog-Retrieval
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
twoXes/awesome-structural-bioinformatics
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
psipred/DMPfold
De novo protein structure prediction using iteratively predicted structural constraints
psipred/DMPfold2
Fast and accurate protein structure prediction
mircare/Porter5
Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
lightdock/lightdock-rust
A Rust implementation of the LightDock macromolecular docking software
Bhattacharya-Lab/PolyFold
An interactive visual simulator for distance-based protein folding
MPI-Dortmund/pymissense
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
Bitbol-Lab/DiffPALM
Differentiable Pairing using Alignment-based Language Models
Eryk96/NetSurfP-3.0
NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction
okkevaneck/prospr
Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available as a separate zip file to facilitate high-performance computing applications. The package comes with many prediction algorithms and datasets to use.
urban233/PySSA
Python rich client for visual protein Sequence to Structure Analysis
johnnytam100/awesome-protein-design
A curated list of awesome protein design research, software and resources.
amckenna41/protPy
Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.
PhilippThoelke/protein-folding
Protein structure prediction using optimization methods from the field of machine learning
taneishi/CB513_dataset
CB513 datasets for Protein Secondary Structure Prediction
Bhattacharya-Lab/CASP15
CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods
Bhattacharya-Lab/QDeep
Distance-based protein model quality estimation using deep ResNets
CompSoftMatterBiophysics-CityU-HK/Applying-DRL-to-HP-Model-for-Protein-Structure-Prediction
Source code and dataset for 2022 Publication "Applying Deep Reinforcement Learning to the HP Model for Protein Structure Prediction"
SAMY-ER/Protein-Structure-Prediction
This project aims to solve a simplified version of the Protein Structure Prediction problem, represented as a combinatorial optimization task, using Reinforcement Learning.
thuxugang/opus_rota5
OPUS-Rota5: A Highly Accurate Protein Side-chain Modeling Method with 3D-Unet and RotaFormer
fpolticelli/tbblab_repository
List of useful resources for the Bioinformatics and Computational Biology field
libai1943/Protein-Structure-Optimization-via-Metaheuristics
A balance-evolution artificial bee colony algorithm for protein structure optimization based on a three-dimensional AB off-lattice model
renatawong/quantum-protein-structure-prediction
Quantum algorithms for protein structure prediction. Language: Python (Qiskit). Platform: IBM Quantum's backends and simulators.
THU-ATOM/AIRFold
AIRFold Protein Structure Prediction System
Galaxies99/alpha-protein
Alpha-Protein: Protein Contact-map Prediction Boosted by Attention
liponan/structure-generator
A machine learning model that builds amino acids into a protein model.
dohlee/rosettafold-pytorch
An unofficial re-implementation of RoseTTAFold, a three-track deep learning model for protein structure prediction.
honig-lab/ZEPPI
A method designed for proteome-scale sequence-based evaluation of protein-protein interfaces as defined by structural models of protein-protein interaction complexes.