rust-bio/rust-bio

Issues

• Consider publishing intervaltree/datastructures implementation as a standalone crate

  #607 opened 3 months ago by derekleverenz
  1

• Index out of bounds in `FMIndex::backwards_search`

  #606 opened 3 months ago by RagnarGrootKoerkamp
  0

• POA panics on some sets of sequences

  #572 opened 3 months ago by davidlougheed
  8

• POA index out of bounds

  #549 opened 3 months ago by wdecoster
  26

• Unnecessary and unsound use of unsafe

  #581 opened 6 months ago by albertsgarde
  2

• ❔ [Question]: Has anyone started wrapping a Python package around rust-bio?

  #592 opened 6 months ago by galenseilis
  0

• POA consensus seems incorrect

  #591 opened 6 months ago by davidlougheed
  1

• Integration of `PDBTBX`

  #589 opened 7 months ago by OWissett
  0

• "Error(Deserialize" when reading records from file

  #583 opened 9 months ago by simonharnqvist
  2

• POA end gap/semi-global alignment

  #568 opened a year ago by ctsa
  7

• action-semantic-pull-request does not accept 'deps' as type

  #544 opened 9 months ago by dcroote
  2

• Performance issues with the pairwise alignment module

  #578 opened 9 months ago by Guelakais
  8

• Strange Behavior of the fasta reader module

  #579 opened 9 months ago by Guelakais
  5

• Question: How does the rust-bio distance module handle ambiguous bases?

  #570 opened 9 months ago by nrminor
  2

• Which alignment algorithm is which?

  #576 opened 10 months ago by Guelakais
  3

• Question : how to get all the elements of Dbxref

  #574 opened 10 months ago by simonpenel
  0

• POA method to get aligned sequences with gaps back?

  #571 opened a year ago by davidlougheed
  3

• Pretty format for multiple sequence alignment with POA

  #547 opened a year ago by jhrcook
  1

• Compat error with array depencency

  #556 opened a year ago by jakobnissen
  2

• Update statrs version to 0.16 to avoid future rust incompatibility

  #559 opened a year ago by robinpaul85
  0

• Coverage CI test failing due to compiler bug (being addressed upstream)

  #543 opened a year ago by dlaehnemann
  1

• RankSelect uses double the space needed

  #548 opened a year ago by jorgehermo9
  0

• Select operation on RankSelect structure may be broken

  #545 opened a year ago by jorgehermo9
  0

• Cargo.toml instructions should suggest `bio = "1"` instead of `bio = "*"`

  #546 opened a year ago by ChaiTRex
  0

• Current status, plans and support

  #520 opened a year ago by SKY-ALIN
  2

• [Feature Request] Add Transcription & Translation capabilities

  #526 opened 2 years ago by Cardosaum
  0

• Partial order alignment gives incorrect graph when the first position is a mismatch

  #443 opened 2 years ago by arcresu
  1

• `pub use bio-types` wherever they are used to avoid dependency hell

  #516 opened 2 years ago by corneliusroemer
  2

• New paper

  #519 opened 2 years ago by smortezah
  0

• keywords and categories are missing on cargo.toml

  #518 opened 2 years ago by anilbey
  0

• DOC: Not documented that FM index / suffix array / BWT require terminal sentinel character

  #495 opened 2 years ago by corneliusroemer
  1

• Error on cargo build

  #477 opened 2 years ago by bioibogithub
  2

• Wrap sequence in output file

  #508 opened 2 years ago by alvanuffelen
  1

• DOC: Recommended crate twoway is deprecated

  #493 opened 2 years ago by corneliusroemer
  0

• DOC: public fn alignment::sparse::expand_kmer_matches not documented

  #494 opened 2 years ago by corneliusroemer
  0

• FEAT: Support unicode strings, not just byte sequences

  #492 opened 2 years ago by NickCrews
  0

• bed::Reader does not respect comment lines

  #473 opened 3 years ago by mrvollger
  1

• FASTA/Q sequence record check insufficient

  #472 opened 3 years ago by ebioman
  1

• Tracking issue for phylogeny reconstruction algorithms

  #467 opened 3 years ago by RagnarGrootKoerkamp
  0

• Why so many stale branches ?

  #452 opened 3 years ago by stormasm
  2

• Expanding the bed record to bed12

  #462 opened 3 years ago by mrvollger
  0

• Potentially incorrect positions from fm-index backward_search

  #454 opened 3 years ago by rob-p
  13

• Curious about reading 3 column bed file into IntervalTree

  #459 opened 3 years ago by jelber2
  6

• Support IUPAC extensions for Protein alphabet

  #435 opened 3 years ago by multimeric
  2

• FMD index documentation a little misleading?

  #450 opened 3 years ago by Daniel-Liu-c0deb0t
  1

• Status of sampled SA

  #446 opened 3 years ago by Daniel-Liu-c0deb0t
  0

• Canonical way to convert between formats?

  #440 opened 3 years ago by lskatz
  4

• Canonical way to convert to sam format

  #441 opened 3 years ago by lskatz
  0

• Make FASTA Index methods and structs public

  #421 opened 4 years ago by mbhall88
  3

• Make clear what base indexing is being used

  #422 opened 4 years ago by mbhall88
  0