rust-bio/rust-bio

Issues

• error[E0046]: not all trait items implemented, missing: `is_empty`

  #404 opened 2 years ago by simenbm
  1

• Restructure rust-bio to speedup compilation and reduce dependencies

  #342 opened 4 years ago by natir
  24

• Implement the WFA algorithm

  #366 opened 4 years ago by TianyiShi2001
  6

• improve docs: `data_structures::smallints`

  #294 opened 3 years ago by dlaehnemann
  0

• Logo for Rust-Bio

  #336 opened 4 years ago by HenningTimm
  17

• Plans on implementing VCF/BCF reader in pure Rust?

  #420 opened 4 years ago by xosxos
  2

• Suffix Array speed and memory usage on a human genome.

  #419 opened 4 years ago by mrvollger
  3

• fix cargo tarpaulin timing out in GitHub Actions

  #374 opened 4 years ago by dlaehnemann
  5

• Pattern matching error

  #416 opened 4 years ago by Euphrasiologist
  3

• bio-types 0.10.0 cannot find macro `matches!` in this scope

  #410 opened 4 years ago by adriana-twist
  2

• Use crate thiserror to simplify error management.

  #341 opened 4 years ago by natir
  4

• Document [de]serialisation of data structures

  #406 opened 4 years ago by blahah
  0

• Bayes factors should be stored as a logarithmic value.

  #405 opened 4 years ago by andy-thomason
  0

• Impl SequenceRead for Record is missing 'is_empty' implementation

  #402 opened 4 years ago by rhysnewell
  1

• [ENH] Stabilize API of exact string matching algos with a trait

  #401 opened 4 years ago by sholderbach
  0

• Should sequence-related IO be consistent on using `Vec<u8>/&[u8]`?

  #397 opened 4 years ago by TianyiShi2001
  2

• Improving the representation of alignment results [breaking changes]

  #363 opened 4 years ago by TianyiShi2001
  3

• Suggested update to io::fasta::Writer documentation

  #388 opened 4 years ago by mooreryan
  2

• Fix `cargo doc` warnings

  #320 opened 4 years ago by tedil
  0

• Use git hooks

  #369 opened 4 years ago by TianyiShi2001
  5

• unify GitHub Actions workflow across rust-bio org

  #375 opened 4 years ago by dlaehnemann
  2

• Fix clippy warnings — single-character variable names

  #377 opened 4 years ago by TianyiShi2001
  1

• Fix clippy warnings — the pairhmm mod

  #376 opened 4 years ago by TianyiShi2001
  0

• Xclip and Yclip variants in AlignmentOperation is not necessary

  #362 opened 4 years ago by TianyiShi2001
  1

• More Benchmark Comparisons with SeqAn (and other bioinformatics libraries)

  #358 opened 4 years ago by TianyiShi2001
  0

• Faster, more space-efficient (global) alignment

  #347 opened 4 years ago by TianyiShi2001
  4

• Using KaTeX for math expressions in docs

  #349 opened 4 years ago by TianyiShi2001
  3

• Sequence analysis on polypeptides

  #350 opened 4 years ago by TianyiShi2001
  0

• Memory allocation failed error when running 'cargo test'

  #343 opened 4 years ago by joshwilding4444
  14

• Implementing GATK-like "chromosomal progress" display

  #345 opened 4 years ago by holtgrewe
  1

• Coveralls "SOURCE NOT AVAILABLE"

  #335 opened 4 years ago by dcroote
  1

• floating point inaccuracy in gcn_content

  #337 opened 4 years ago by kloetzl
  0

• improve docs: `data_structures::bitenc`

  #285 opened 4 years ago by dlaehnemann
  1

• Documentation: error handling in examples:

  #327 opened 4 years ago by TomKellyGenetics
  9

• improve docs: `io::fastq`

  #317 opened 4 years ago by TomKellyGenetics
  0

• Improve docs: `io::fasta`

  #295 opened 4 years ago by tedil
  2

• Improve docs: `io::gff`

  #297 opened 4 years ago by tedil
  0

• improve docs: `data_structures::bit_tree`

  #288 opened 4 years ago by dlaehnemann
  0

• enable formatting of code in docs

  #322 opened 4 years ago by tedil
  0

• improve docs: `data_structures::interpolation_table`

  #292 opened 4 years ago by dlaehnemann
  0

• Improve docs: `stats::pairhmm`

  #284 opened 4 years ago by tedil
  0

• improve docs: `data_structures::suffix_array`

  #296 opened 4 years ago by dlaehnemann
  0

• Improve docs: `seq_analysis::gc`

  #293 opened 4 years ago by tedil
  0

• Improve docs: `stats::combinatorics`

  #286 opened 4 years ago by tedil
  0

• Improve docs: `seq_analysis::orf`

  #291 opened 4 years ago by tedil
  0

• Improve docs: `stats::bayesian::bayes_factor`

  #290 opened 4 years ago by tedil
  0

• Fix some clippy issues

  #300 opened 4 years ago by tedil
  0

• Add reduced representation/ simplified amino acid alphabets

  #303 opened 4 years ago by HenningTimm
  0

• Improve docs: `stats::bayesian::mod`

  #289 opened 4 years ago by tedil
  0

• Improve docs: `stats::bayesian::model`

  #287 opened 4 years ago by tedil
  0