Pinned Repositories
3DC-Browser
A visualization and annotation tool for 3D structures of chromosomes
FISH_MDS
A Julia package that models 3D structures from Hi-C contact matrices
GenArch
GenArch software for whole genome 3D reconstruction
GINOM
GINOM is a statistical framework for assessing interval overlap of multiple genomic features.
Intro_ML_AI
Introduction to Machine Learning and Artificial Intelligence
RepEnrich2
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics
SenGuiDe
Software to generate figures in the SenGuiDe manuscript
SIMBA3D
Structure Inference (from) Multiscale BAyes in 3D
WPSCalc
Calculates Window-Protection Score from aligned sequencing data over a given Chromosome & interval
nerettilab's Repositories
nerettilab/RepEnrich2
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
nerettilab/GINOM
GINOM is a statistical framework for assessing interval overlap of multiple genomic features.
nerettilab/3DC-Browser
A visualization and annotation tool for 3D structures of chromosomes
nerettilab/SIMBA3D
Structure Inference (from) Multiscale BAyes in 3D
nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics
nerettilab/FISH_MDS
A Julia package that models 3D structures from Hi-C contact matrices
nerettilab/GenArch
GenArch software for whole genome 3D reconstruction
nerettilab/Intro_ML_AI
Introduction to Machine Learning and Artificial Intelligence
nerettilab/SenGuiDe
Software to generate figures in the SenGuiDe manuscript
nerettilab/WPSCalc
Calculates Window-Protection Score from aligned sequencing data over a given Chromosome & interval
nerettilab/SenescenceGenomicArchitecture