nerettilab/RepEnrich2
RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
Python
Issues
- 0
Use in ChIP Seq Analysis
#31 opened by jesswhitts - 0
Sample processing time
#30 opened by zonzero - 0
Differential expression analysis
#29 opened by matwgmkw - 1
index for step 3
#28 opened by matwgmkw - 1
More questions
#27 opened by matwgmkw - 3
Got stuck with RepEnrich2
#26 opened by matwgmkw - 1
RepEnrich with different aligner?
#25 opened by richardheery - 10
RepEnrich2 gets stuck without error message
#24 opened by mmisak - 2
For non-model organism
#23 opened by RadPa - 1
- 2
RepEnrich2_setup error
#21 opened by xiaoyonf - 3
suggested bowtie2 parameters for RepEnrich2
#20 opened by akmorrow13 - 1
Keep alignments to metagenome
#17 opened by adomingues - 1
- 6
RepEnrich2_subset.py rna-seq PE error
#16 opened by Runuply - 3
RepEnrich2_setup.py
#15 opened by Danielchan1324 - 0
RepEnrich2_setup.py
#14 opened by Danielchan1324 - 9
Error: Bowtie2 or BEDTools not loaded
#13 opened by ConYel - 0
Include hg38 setup
#12 opened by roryk - 2
Question about normalisation
#11 opened by re2srm - 1
Estimating progress
#10 opened by re2srm - 1
About fasta file
#7 opened by Yuanyuan84 - 6
Repetitive elements coordinates
#9 opened by iramai - 3
What results use for further analysis
#8 opened by iramai - 3
About repeatmasker.bed file in human
#6 opened by Yuanyuan84 - 0
- 1
- 1
- 5
Computing time
#5 opened by Rdroit