Add brain segmentations on `whole-spine` dataset

Question

Nilser3 opened this issue 3 months ago · 4 comments

Description

I am currently segmenting whole-spine dataset with samseg tool, and would like to add these masks to the git-annex.

sub-amuAL_T1w_label-brain_dseg.nii.gz

Answer 1 · 2024-07-18T13:03:14.000Z

Hi @mguaypaq
Could you give me W access to whole-spine dataset please

Thanks you

Answer 2 · 2024-07-18T18:05:24.000Z

@Nilser3 I just gave you write access.

Answer 3 · 2024-07-19T20:47:11.000Z

Brain segmentations have been done!
are currently in my branch: nlm/brain-segmentation-synthseg

The subject sub-unfErssm001 has a cropped brain, so it could not be segmented (see image).

and subject sub-unfErssm021 has no T1w image, so it was not segmented.

Answer 4 · 2024-07-22T13:14:05.000Z

Super! Thank you Nilser :)