neuropoly/data-management

Issues

• `philadelphia-pediatric`: organization and naming of new subjects

  #334 opened a month ago by valosekj
  6

• `philadelphia-pediatric` - swapped R-L axis for `rec-composed` images?

  #337 opened 10 days ago by valosekj
  0

• Undersegmented spinal cord labels in `philadelphia-pediatric`

  #336 opened 19 days ago by naga-karthik
  0

• `dcm-oklahoma` - new data

  #335 opened a month ago by valosekj
  1

• New dataset `lumbar-rsna-challenge2024`

  #332 opened a month ago by Nilser3
  3

• Adding DWI data to the dataset `ms-karolinksa-2020`

  #333 opened a month ago by plbenveniste
  0

• Add brain segmentations on `whole-spine` dataset

  #330 opened a month ago by Nilser3
  4

• New dataset `hc-ucsf-psir`

  #323 opened 2 months ago by Nilser3
  12

• New dataset `infant-brain-basel`

  #331 opened a month ago by amahlig
  1

• Creating new git-annex datasets repos

  #329 opened 2 months ago by plbenveniste
  2

• `philadelphia-pediatric` - different conventions for disc labels

  #328 opened 2 months ago by valosekj
  5

• Adding 7T MP2RAGE data from Leipzig

  #322 opened 2 months ago by jcohenadad
  12

• Consider renaming `marseille-rootlets` to `cervical-marseille`

  #327 opened 2 months ago by valosekj
  3

• New dataset `lumbar-marseille`

  #325 opened 2 months ago by valosekj
  10

• New dataset `dcm-brno`

  #326 opened 2 months ago by valosekj
  1

• New dataset `lumbar-nusantara`

  #313 opened 3 months ago by Nilser3
  12

• New dataset `head-neck-tumor-challenge-2024`

  #324 opened 2 months ago by Nilser3
  2

• Cannot git pull: error: Unable to create '/Users/julien/data.neuro/canproco/.git/index.lock': File exists.

  #321 opened 3 months ago by jcohenadad
  2

• Correcting header segmentation files

  #301 opened 3 months ago by plbenveniste
  7

• Question for NYU Shepherd regarding `ms-nyu` metadata

  #319 opened 3 months ago by plbenveniste
  1

• Grant dataset access to Yehuda for the totalsegmentator-mri project

  #320 opened 3 months ago by NathanMolinier
  1

• `data_axondeepseg_stanford` update with labels

  #297 opened 7 months ago by hermancollin
  3

• Cannot connect to neurogitea

  #318 opened 3 months ago by jcohenadad
  8

• Efficient way to add the corresponding authors-to-contact for each site in `sct-testing-large`

  #317 opened 3 months ago by naga-karthik
  0

• New dataset `goldatlas`

  #314 opened 3 months ago by NathanMolinier
  1

• New dataset `mrspineseg-challenge-2021`

  #315 opened 3 months ago by NathanMolinier
  1

• New dataset `synthrad-challenge-2023`

  #316 opened 3 months ago by NathanMolinier
  1

• New dataset `exvivo-spinal-cord`

  #311 opened 3 months ago by Nilser3
  4

• How to find MRI data with large field-of-view FOV (e.g. localizer)

  #312 opened 3 months ago by jcohenadad
  0

• Document better how to list files on gitea

  #310 opened 4 months ago by jcohenadad
  0

• Split `label-multi_dseg` and merge sacrum with spine data spider-challenge-2023

  #309 opened 4 months ago by NathanMolinier
  1

• Different size of T2w images and SC segmentations

  #306 opened 4 months ago by valosekj
  1

• Add total segmentator data to whole-spine

  #308 opened 4 months ago by NathanMolinier
  3

• Canproco SC segmentation were saved with a wrong header

  #305 opened 4 months ago by NathanMolinier
  9

• Fix canproco SC segmentations

  #307 opened 4 months ago by NathanMolinier
  3

• Working with some git-annexed datasets on `~/duke/temp` is extremly slow

  #304 opened 5 months ago by valosekj
  16

• MS lesion Ground Truth segmentation on MP2RAGE images

  #292 opened 7 months ago by Nilser3
  11

• Added sc seg for MS patient in canproco and sct-testing-large

  #303 opened 6 months ago by plbenveniste
  7

• Update the GT segmentation file names with the new conventions

  #300 opened 6 months ago by Nilser3
  8

• Add sacrum segmentation to `spider-challenge-2023` and `whole-spine`

  #302 opened 6 months ago by NathanMolinier
  1

• bids-validator errors

  #299 opened 7 months ago by mguaypaq
  1

• New dataset: `data_axondeepseg_cars`

  #298 opened 6 months ago by hermancollin
  1

• `dcm-zurich-lesions-20231115` - add T2w ax SC GT

  #295 opened 6 months ago by valosekj
  3

• Updating CanProCo M0 data with Erin's new data

  #296 opened 6 months ago by plbenveniste
  4

• Correct discs labels for the dataset sct-testing-large

  #294 opened 7 months ago by NathanMolinier
  1

• Adding the public dataset `spider` to our git-annex server

  #293 opened 7 months ago by NathanMolinier
  5

• Fix label file

  #291 opened 7 months ago by jcohenadad
  0

• duke is full (again)

  #290 opened 7 months ago by jcohenadad
  1

• Make a git/gitolite hook to verify that large files are annexed

  #289 opened 7 months ago by mguaypaq
  0

• Consider converting the `data_type` of all images to `uint16` to save space

  #288 opened 8 months ago by naga-karthik
  6