Pinned Repositories
axonpacking
axonseg
Segment axon and myelin from microscopy data. Written in Matlab.
deep-active-learning
Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)
domainadaptation
Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".
gifmaker
Convert images to GIF animation.
gmseg
Spinal cord gray matter segmentation using deep dilated convolutions.
multiclass-segmentation
Repository for the code related to the NIH marmoset longitudinal segmentation project.
t2star-mapping
Collection of scripts to fit T2* MRI data
template
A framework for creating unbiased MRI templates of the spinal cord
vertebral-labeling-deep-learning
Deep Learning method for intervertebral disc detection and labeling (WIP)
NeuroPoly's Repositories
neuropoly/template
A framework for creating unbiased MRI templates of the spinal cord
neuropoly/totalspineseg
Segmentation of vertebrae, intervertebral discs, spinal cord and CSF from MRI images.
neuropoly/data-management
Repo that deals with datalad aspects for internal use
neuropoly/intranet.neuro.polymtl.ca
NeuroPoly's lab manual
neuropoly/lesion-mapping
Set of tools for mapping lesions in the brain and/or spinal cord
neuropoly/gitea
https://gitea.io fork with https://git-annex.branchable.com support
neuropoly/neuro.polymtl.ca
NeuroPoly's Website
neuropoly/Susceptibility-Separation-Phantom
This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.
neuropoly/paradim-segmentation-brain
Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM
neuropoly/phantom-spinoza
CAD model and recipe for MRI head-torso phantom fabrication
neuropoly/atlas-rat
Scripts to generate a microstructure atlas of the rat spinal cord
neuropoly/changelog
Create a changelog file from all the merged pull requests
neuropoly/idea-projects
Ideas for cool projects
neuropoly/pediatric-DL-registration
neuropoly/slicer-manual-annotation
neuropoly/ansible
Ansible roles published to https://galaxy.ansible.com/
neuropoly/bibeasy
Set of tools to manage academic bibliography
neuropoly/bids-examples
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
neuropoly/bids-hook
Tiny CI server to run bids-validator using Gitea webhooks
neuropoly/bids-specification
Brain Imaging Data Structure (BIDS) Specification
neuropoly/bids-validator
Validator for the Brain Imaging Data Structure
neuropoly/coda
Deployment and testing repository for https://www.coda-platform.com/
neuropoly/coil-spine7t
Material for the 8Tx/20Rx 7T c-spine coil
neuropoly/cortical-surface64mT
Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI
neuropoly/data-multi-subject-test
Multi-subject data for the Spine Generic project
neuropoly/github-app-token
Impersonate a GitHub App in a GitHub Action
neuropoly/pediatric-intra-inter-encoding
neuropoly/realtime-dynamic-shimming
batch processing for realtime dynamic shimming of MGRE cervical spinal cord images
neuropoly/single_voxel_mrs_b0_shimming
This repo includes a jupyter notebook to analyze and compare MRS spectra acquired using different B0 shim optimization approaches
neuropoly/tract-clustering
Data-driven approach for tracts in rat histology