Segmentation Domain Adaptation for MRI

Repository for the Domain Adaptation work using the self-ensembling (mean teacher) for the domain adaptation of MRI images.

Installing requirements

Requirements for this project:

(required) Python 3.6 (use a virtual environment);
(required) Spinal Cord Toolbox(SCT)
(required) medicaltorch
(optional) FSLeyes/FSLview/FSLutils

These requirements are not included in the setup.py requirements, since they aren't pip-installable, so you need to install them before installing the project.

Documentation

All the documentatio is in Sphinx. First, create a Python 3.6 environment and then do:

~# git clone https://github.com/neuropoly/domainadaptation.git
~# cd domainadaptation
~# pip install -e .
~# cd docs
~# make html

The output HTML will be generated inside the docs/build/html folder.