neurostuff/NiMARE

Issues

• running reports with neurostore reference dataset takes **a lot** of memory

  #879 opened 9 months ago by jdkent
  5

• The correlation matrix should be calculated in signal voxels

  #888 opened 4 months ago by JulioAPeraza
  1

• matplotlib version 3.9.0 removed get_cmap

  #886 opened 6 months ago by jdkent
  0

• nilearn 0.10.3 breaks nimare

  #872 opened 7 months ago by adelavega
  5

• `tqdm` is not working with joblib.Parallel (tqdm_joblib)

  #846 opened 10 months ago by JulioAPeraza
  1

• black enforces newline after docstring

  #875 opened 10 months ago by jdkent
  0

• Optimize ImagesToCoordinates with `Parallel`

  #871 opened 10 months ago by JulioAPeraza
  0

• [DOCS] Update correlation decoder section & add live running example

  #869 opened 10 months ago by adelavega
  5

• beta maps in the workflow report

  #867 opened 10 months ago by jdkent
  0

• Implement early-stopping rule for Monte Carlo FWE Correction

  #866 opened 10 months ago by tsalo
  0

• Refactor FWECorrection to be space efficient

  #862 opened 10 months ago by adelavega
  0

• Disable MKDAChi2 posterior probability outputs by default

  #855 opened a year ago by tsalo
  0

• Add similarity-sorted correlation matrix figure to IBMA reports

  #847 opened a year ago by tsalo
  2

• Deprecate the `ale_sleuth_workflow` function in favor of `CBMAWorkflow` and `PairwiseCBMAWorkflow`?

  #849 opened a year ago by JulioAPeraza
  0

• Add caching for nimare.meta algorithms

  #844 opened a year ago by JohannesWiesner
  0

• Refactor or replace `macm_workflow` with `MACMWorkflow` class

  #850 opened a year ago by JulioAPeraza
  0

• Implement caching for nimare.io.convert_neurosynth_to_dataset

  #826 opened a year ago by JohannesWiesner
  2

• Compatibility issue of ImageTransformer with Pandas 2.1.2

  #842 opened a year ago by JulioAPeraza
  0

• nidm to nimare dataset

  #837 opened a year ago by Remi-Gau
  4

• focus filter index error

  #838 opened a year ago by jdkent
  0

• torch is a heavy requirement

  #806 opened a year ago by jdkent
  1

• Replace `m2r` with a package that is maintained

  #795 opened 2 years ago by JulioAPeraza
  1

• TypeError: 'bool' object is not iterable

  #822 opened a year ago by JohannesWiesner
  4

• NoneType error for no group_categories

  #825 opened a year ago by yifan0330
  1

• Example notebook

  #818 opened a year ago by MaxKorbmacher
  1

• Recruiting GPU not possible (coordinate-based meta-analysis)

  #819 opened a year ago by MaxKorbmacher
  1

• Include as a part of the boilerplate what transformation(s) if any was applied to coordinates

  #816 opened a year ago by jdkent
  0

• plotly graph for reports has large text when report viewed locally

  #814 opened a year ago by jdkent
  2

• cannot execute run_reports

  #813 opened a year ago by jdkent
  0

• Add Reports module

  #773 opened a year ago by jdkent
  0

• Add Corrector and Diagnostics as attributes to the MetaResults object

  #800 opened a year ago by JulioAPeraza
  0

• Set `n_iters=10000` default only for `null_method="montecarlo"`

  #801 opened 2 years ago by JulioAPeraza
  0

• Repeated/missing contrast info when converting sleuth file to dict

  #799 opened 2 years ago by yifan0330
  5

• readthedocs build failing

  #798 opened 2 years ago by jdkent
  0

• Refactor diagnostics module

  #772 opened 2 years ago by JulioAPeraza
  0

• Allow CorrelationalDecoder to use pre-generated statmaps

  #781 opened 2 years ago by adelavega
  1

• woohoo codecov needs to be migrated

  #787 opened 2 years ago by jdkent
  2

• add jupyterlite links to the examples gallery

  #784 opened 2 years ago by jdkent
  0

• Adopt NumPy Python drop schedule

  #783 opened 2 years ago by adelavega
  0

• drop python 3.6, 3.7 from CI, and add python 3.11

  #779 opened 2 years ago by jdkent
  0

• Run an arbitrary CBMA workflow

  #760 opened 2 years ago by jdkent
  0

• use pydantic to create a nimads module in nimare

  #775 opened 2 years ago by jdkent
  0

• Add `save()` and `load()` methods to `MetaResult` objects.

  #770 opened 2 years ago by JulioAPeraza
  1

• Version 0.0.13 fails with older numba version

  #766 opened 2 years ago by dlevitas
  3

• Append copyright waiver to boilerplate text

  #767 opened 2 years ago by tsalo
  0

• support nibabel 5.0.0+

  #759 opened 2 years ago by jdkent
  1

• Release of Nilearn 0.10.0 has matplotlib>3.3.0 requirement

  #755 opened 2 years ago by jdkent
  2

• nibabel 5.0 release raises ValueError when unreliable datatypes are used.

  #758 opened 2 years ago by jdkent
  0

• Numba depends on specific versions of numpy

  #756 opened 2 years ago by jdkent
  0

• Fix a bug in conversion from z statistics to p values

  #748 opened 2 years ago by yifan0330
  2