nextstrain/.github

Issues

• docs-ci: `make linkcheck` prone to transient network failures

  #106 opened 2 months ago by victorlin
  17

• pathogen-repo-build: Cancel AWS Batch job when GitHub run is cancelled

  #108 opened a month ago by victorlin
  2

• docs-ci: Check external links

  #29 opened 3 months ago by tsibley
  2

• pathogen-repo-ci: Add input for GH Action runner

  #103 opened 3 months ago by joverlee521
  2

• Standardize pathogen-repo-ci use across pathogen repos

  #84 opened 3 months ago by joverlee521
  3

• Update pathogen repos to conform to smart `pathogen-repo-ci`

  #94 opened 4 months ago by joverlee521
  1

• Output AWS Batch job ID from pathogen-repo-build worklfow

  #79 opened 4 months ago by joverlee521
  5

• `pathogen-repo-build` should save `AWS_DEFAULT_REGION` envvar

  #97 opened 4 months ago by joverlee521
  1

• Should the pathogen-repo-ci be louder if no workflows are run?

  #92 opened 5 months ago by joverlee521
  7

• ENH: Allow pathogen-repo-ci to invoke workflow in subfolder

  #63 opened 5 months ago by corneliusroemer
  2

• pathogen-repo-build: Generate a Snakemake report for workflow

  #100 opened 5 months ago by joverlee521
  6

• Pin existing uses of `pathogen-repo-ci`

  #93 opened 5 months ago by joverlee521
  3

• Update pathogen-repo-ci to "generic"/"smart" workflow

  #89 opened 5 months ago by genehack
  5

• Centralize existing pathogen build workflows

  #46 opened 5 months ago by joverlee521
  4

• Allow pathogen-repo-ci to use a local version of Augur

  #66 opened 5 months ago by joverlee521
  2

• ENH(pathogen-repo-ci): Cache "setup-nextstrain" to save 1-2min (>50%)

  #56 opened 5 months ago by corneliusroemer
  1

• CI shouldn't fail on expected failure

  #58 opened 6 months ago by corneliusroemer
  5

• Explore GitHub issue forms

  #83 opened 6 months ago by victorlin
  0

• CI: pathogen-repo-build (aws-batch) does not output full logs to build.log

  #77 opened 7 months ago by joverlee521
  7

• pathogen-repo-ci: Run with `--ambient` in addition to `--docker`

  #25 opened a year ago by victorlin
  8

• pathogen-repo-build: Display AWS Batch summary even when job was attached

  #50 opened a year ago by joverlee521
  1

• ENH: Upload resulting auspice.jsons to nextstrain-staging for quicker inspection

  #36 opened 2 years ago by corneliusroemer
  6

• docs-ci: Make the Conda setup optional

  #21 opened 2 years ago by victorlin
  0

• Point people to relevant project boards within each repo

  #7 opened 5 years ago by sidneymbell
  0

• Create `DEV_DOCS.md` for each major nextstrain repository

  #3 opened 5 years ago by sidneymbell
  0

• [Proposal] Create a translations project board

  #4 opened 5 years ago by sidneymbell
  1

• Triage and tag open issues across repositories

  #6 opened 5 years ago by sidneymbell
  1

• Create CONTRIBUTING.md for all repositories

  #5 opened 5 years ago by sidneymbell
  0

• Make issue templates

  #2 opened 5 years ago by sidneymbell
  1