nf-core/bacass

sample sheet check reports wrong row item

antunderwood opened this issue · 1 comments

antunderwood commented

In the checks for long reads and fast5 files the wrong file is reported if there is an error

bacass/subworkflows/local/input_check.nf

Line 66 in 9599673

exit 1, "ERROR: Please check input samplesheet -> Long FastQ file does not exist!\n${row.R1}"

Should read

 exit 1, "ERROR: Please check input samplesheet -> Long FastQ file does not exist!\n${row.LongFastQ}"

bacass/subworkflows/local/input_check.nf

Line 74 in 9599673

exit 1, "ERROR: Please check input samplesheet -> Fast5 file does not exist!\n${row.R1}"

Should read

exit 1, "ERROR: Please check input samplesheet -> Fast5 file does not exist!\n${row.Fast5}"
d4straub commented

True, thanks for the report, will be fixed in a new version!