test_mouse fails on github actions (PR on dev)
Closed this issue · 2 comments
tillenglert commented
Description of the bug
After merging a PR the online tests are performed on the dev branch. Following error occurs on test_mouse, while test and test_tiny succeed:
Using TensorFlow backend.
/usr/local/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:526: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint8 = np.dtype([("qint8", np.int8, 1)])
/usr/local/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:527: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint8 = np.dtype([("quint8", np.uint8, 1)])
/usr/local/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:528: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint16 = np.dtype([("qint16", np.int16, 1)])
/usr/local/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:529: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_quint16 = np.dtype([("quint16", np.uint16, 1)])
/usr/local/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:530: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
_np_qint32 = np.dtype([("qint32", np.int32, 1)])
/usr/local/lib/python3.7/site-packages/tensorflow/python/framework/dtypes.py:535: FutureWarning: Passing (type, 1) or '1type' as a synonym of type is deprecated; in a future version of numpy, it will be understood as (type, (1,)) / '(1,)type'.
np_resource = np.dtype([("resource", np.ubyte, 1)])
WARNING - PREDICTION (syfpeithi 1.0) - No model found for H-2-Ld with length 11
WARNING - PREDICTION (syfpeithi 1.0) - No model found for H-2-Ld with length 10
WARNING - PREDICTION (syfpeithi 1.0) - No model found for H-2-Ld with length 9
WARNING - PREDICTION (syfpeithi 1.0) yielded no results for allele H-2-Ld
ERROR - UNEXPECTED - 'str' object has no attribute 'locus'
Upgrade of the epytope v3.3.0 framework did not solve this issue.
Command used and terminal output
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Relevant files
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System information
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tillenglert commented
May be related to Issue: #37
tillenglert commented
https://github.com/KohlbacherLab/epytope/releases/tag/v3.3.1 This Release should fix the Problem!
Still, we need to wait for the corresponding container to be updated!