nf-core/metapep

Issues

• MultiQC

  #60 opened a year ago by skrakau
  0

• Current version doesn't work with syfpeithi and mouse alleles

  #37 opened a year ago by skrakau
  1

• Check supported models and handle warnings

  #48 opened a year ago by skrakau
  3

• Peptide lengths can only be set over all alleles

  #74 opened a year ago by tillenglert
  1

• Caching issue of `PREDICT_EPITOPES` results

  #34 opened a year ago by skrakau
  1

• `INPUT_CHECK` subworkflow restructure

  #71 opened a year ago by tillenglert
  3

• test_mouse fails on github actions (PR on dev)

  #63 opened a year ago by tillenglert
  2

• Tests for MHCflurry and MHCnuggets

  #68 opened a year ago by tillenglert
  0

• Clean up CI tests

  #41 opened a year ago by skrakau
  0

• Look into `polars` python library as alternative for `pandas`

  #66 opened a year ago by tillenglert
  0

• Update relational data model figure

  #59 opened a year ago by skrakau
  4

• Add documentation about internally used data model

  #53 opened a year ago by skrakau
  1

• Use meta map for allele_id and allele_name

  #57 opened a year ago by tillenglert
  1

• Make association of entity_ids and microbiome_ids deterministic

  #51 opened a year ago by skrakau
  0

• Change head to nf-core

  #54 opened a year ago by skrakau
  1

• Pre-filter peptides prior prediction

  #50 opened a year ago by skrakau
  0

• Update to new Pandas 2.0 release

  #49 opened a year ago by skrakau
  0

• Erroneous processing of entities - changed with co-assembly feature

  #38 opened a year ago by skrakau
  0

• Add schematic representation of data model

  #8 opened a year ago by skrakau
  0

• Write documentation

  #9 opened 2 years ago by AntoniaSchuster
  0