Error on running profile test
xmeng opened this issue · 3 comments
Description of the bug
$nextflow pull nf-core/nanoseq
Checking nf-core/nanoseq ...
Already-up-to-date - revision: 1e60482 [master]
(base) [ec2-user@ip-1-9-8 nf-nanoseq]$ nextflow run nf-core/nanoseq -profile test,docker --outdir test_dir
N E X T F L O W ~ version 20.01.0
Launching nf-core/nanoseq [soggy_snyder] - revision: 1e60482 [master]
Unknown config attribute params.genomes.GRCh37.projectDir -- check config file: /home/ec2-user/.nextflow/assets/nf-core/nanoseq/nextflow.config
How to ignore the 'params.genomes.GRCh37.projectDir' ? Thanks.
Command used and terminal output
No response
Relevant files
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System information
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Hi @xmeng, I can't seem to replicate the problem. It runs all the way through for me using the same command: nextflow run nf-core/nanoseq -profile test,docker --outdir test_dir
I see you're running an older version of Nextflow which might be causing some problems. Try updating it using nextflow self-update and see if you get the same problem. The latest is 22.04.5 build 5708 and can be checked by running nextflow info
Thanks for your reply. It works after I upgraded nextflow.
No problem 😄 - I'll close the issue. If you have any other problems you can always reach out on the nanoseq Slack channel