nf-core/nanoseq

Issues

• Errors on --barcode_kit option with barcodes 1-24

  #284 opened a month ago by xmeng
  1

• Add ToulligQC for raw read QC

  #285 opened a month ago by Salome-Brunon
  0

• java.lang.OutOfMemoryError: Java heap space with FastQC

  #283 opened 2 months ago by jlandry69
  0

• Nanoseq Pipeline Fails at Bambu Process with java.lang.Boolean Error

  #279 opened 3 months ago by xeniaroda
  0

• Different Chromosome counts between samtools and bambu

  #278 opened 3 months ago by fbndr98
  0

• FILTER 'STRANDBIAS' is not defined in the header

  #276 opened 3 months ago by mazzalab
  0

• Failed to run medaka consensus

  #275 opened 3 months ago by mazzalab
  0

• Command in stage minimap2_transcriptome failed with exit status = 127

  #271 opened 4 months ago by rajithadp
  0

• ERROR ~ Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (sequences_inputNB.csv)'

  #270 opened 5 months ago by Jordthomas93
  0

• JAFFAL pipeline crashes when singularity is used

  #239 opened 2 years ago by marcDabad
  5

• SNIFFLES_SORT_VCF return an error due to mkdtemp

  #269 opened 7 months ago by samuelecancellieri
  0

• Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt

  #265 opened 8 months ago by CHENAO-QIAN
  0

• Process `NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (23046_LEC_R1)` terminated with an error exit status (2)

  #250 opened 2 years ago by gzentner
  5

• JAFFA error using docker in nf-core/nanoseq version 3.0.0 and 3.1.0

  #240 opened 2 years ago by criphg
  8

• pipeline terminating early

  #264 opened 10 months ago by nick-youngblut
  2

• Total alignments : 0 / featureCount Results

  #115 opened 4 years ago by cagataykos
  1

• Add `dorado` as the basecaller

  #249 opened 2 years ago by bounlu
  2

• Pulling biocontainers:v1.2.0_cv1 Singularity image fails

  #257 opened a year ago by pcrxn
  3

• Pairing between sample and genome is ignored for demultiplexed reads (cDNA mode)

  #254 opened a year ago by nschan
  2

• Nanoplot output files clobber each other ..

  #233 opened 2 years ago by benbfly
  4

• Issue with installing/test run

  #253 opened a year ago by rugilemat
  2

• Nanopolish does not include the required HDF5 plugin and/or VBZ decompression

  #231 opened 2 years ago by Eric-CH-Chen
  7

• modular version of the DNA protocol

  #252 opened a year ago by mvheetve
  0

• Update m6anet to version 2

  #237 opened 2 years ago by matthewstuartedwards
  0

• Parallelize nanopolish eventalign

  #236 opened 2 years ago by matthewstuartedwards
  0

• No profile for Apptainer (Singularity successor)

  #235 opened 2 years ago by paulmenzel
  0

• MultiQC report not triggered by FastQC input

  #234 opened 2 years ago by ktrappe
  0

• To include profile "test" directRNA programs

  #230 opened 2 years ago by Eric-CH-Chen
  0

• Is there a way to run multiple guppy_basecaller jobs in parallel?

  #163 opened 2 years ago by benbfly
  1

• schema incorrect for protocol

  #203 opened 2 years ago by mattdmem
  1

• Incorrect usage example at the Documentation section

  #208 opened 2 years ago by Stakaitis
  1

• Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:RNA_FUSIONS_JAFFAL:UNTAR (null)'

  #192 opened 2 years ago by MustafaElshani
  9

• error running the test example run

  #202 opened 2 years ago by sheucke
  2

• Module compilation error

  #205 opened 2 years ago by sunsetyerin
  1

• Add Nanolyse back to remove guppy branch

  #197 opened 2 years ago by christopher-hakkaart
  1

• error of test run

  #201 opened 2 years ago by sheucke
  0

• make pycoQC run without basecalling/demultiplexing

  #199 opened 2 years ago by FranBonath
  0

• Samtool sort or indexing aborted due to an "unexpected error"

  #198 opened 2 years ago by FranBonath
  0

• Multiqc step failure

  #193 opened 2 years ago by pditommaso
  2

• Error on running profile test

  #190 opened 2 years ago by xmeng
  3

• bamaddreadbundles failed

  #176 opened 3 years ago by mgp2022
  1

• typo in subway map

  #174 opened 3 years ago by maxulysse
  1

• GraphMap2_Align Crash

  #175 opened 3 years ago by DrOllyGomez
  2

• consideration output directory custom

  #173 opened 3 years ago by yinshiyi
  0

• Output demultiplexed fast5 files

  #156 opened 3 years ago by ekushele
  0

• parameters to use for the rapid barcode 96 kit

  #160 opened 3 years ago by nick-youngblut
  0

• Failed to pass path of testdata azure

  #151 opened 3 years ago by vsmalladi
  1

• Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT

  #141 opened 3 years ago by wdiao-zju
  2

• problem specifying local genome and transcriptome

  #123 opened 3 years ago by markdunning
  1

• Nanoseq not pulling Deseq2 and Dexseq

  #119 opened 3 years ago by AnunayS
  0