Config loaded twice

[fabianegli]

Description of the bug

@drpatelh reported this in Slack

https://nfcore.slack.com/archives/C02Q3FL29PD/p1661255290163269

Hola! Just noticed you have a bug in the dev code where you are trying to load the same config twice:

quantms/nextflow.config

Lines 291 to 293 in 6ffb0c9

	// Load module config after profile, so they can depend on overwritten input parameters specific for each profile.
	// Load modules.config for DSL2 module specific options
	includeConfig 'conf/modules.config'

quantms/nextflow.config

Lines 337 to 338 in 6ffb0c9

	// Load modules.config for DSL2 module specific options
	includeConfig 'conf/modules.config'

You should keep the one defined later in the config.

Command used and terminal output

No response

Relevant files

No response

System information

No response