Create dummy fastq data for testing
Closed this issue · 2 comments
allaway commented
Description of feature
Perhaps we can pick a virus - say HPV1 - and a couple of human reads - and generate paired fastq.gz files for testing.
I considered reusing https://github.com/nf-core/test-datasets/tree/sarek/testdata/dummy but I expect we'll want something with both human and viral sequences.
edmundmiller commented
There's one possibly floating around here:
https://github.com/bioinformaticsdotca/BiCG_2019
There's also test data in https://github.com/broadinstitute/CTAT-VirusIntegrationFinder/tree/a27faf55cfa9dcc9f4fffa107d05bc9e1c7d82ed/testing. So I think for now we just need to wire that up, and we can move it to nf-core/test-datasets if we need to make changes.
edmundmiller commented