DataPLANT
Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.
Pinned Repositories
ARC-specification
ARCCommander
Tool to manage your ARCs
ARCitect
Cross-platform app to create and manage ARCs.
ARCtrl
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
DataHUB
This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
dataplan
DataPLAN is the Data Management Plan (DMP) generator developed in DataPLANT
nfdi4plants_ontology
An intermediate ontology for plants used by DataPLANT to fill the ontology gap
Swate
Excel Add-In for annotation of experimental data and computational workflows.
Swate-templates
A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
Swobup
Swate DB update tool
DataPLANT's Repositories
nfdi4plants/cwl-examples
various example cwl workflows
nfdi4plants/Hackathon_SampleRun
nfdi4plants/ARCWebAPI
Project for supplying a Common API for ARC related tasks
nfdi4plants/raw_data_parser
raw data pasers (fastq, mzml) and their work
nfdi4plants/arc-playground
nfdi4plants/Spawn
Word Add-In to create workflow annotations from protocols.
nfdi4plants/WebHub
DataPLANT science gateway
nfdi4plants/ga-to-delegation
Generates a CWL Galaxy delegation workflow from a Galaxy workflow (.ga) file.
nfdi4plants/arc-to-geo
nfdi4plants/bioconda-recipes
Conda recipes for the bioconda channel.
nfdi4plants/cwl-galaxy-parameter-parser
A tool to convert workflow parameters in the form of commandline arguments to .yml files.
nfdi4plants/dataplant-errorpages
nfdi4plants/galaxy
Data intensive science for everyone.
nfdi4plants/galaxy-example-arc
nfdi4plants/galaxy-workflow-to-arc
Reads .ga files to generate a cwl tool wrapper with the same inputs as the ga file
nfdi4plants/mixed-galaxy-delegation-workflow
A CWL workflow that combines a ProteomIQon Galaxy delegation workflow with a local CWL plot workflow
nfdi4plants/multi-package-containers
Testing building mulled containers for multi-requirement tools.
nfdi4plants/nf-core-pipeline-to-arc
Reads nextflow_schema.json from a nf-core pipeline to generate a cwl tool wrapper with the same inputs
nfdi4plants/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission