DataPLANT
Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.
Pinned Repositories
ARC-specification
ARCCommander
Tool to manage your ARCs
ARCitect
Cross-platform app to create and manage ARCs.
ARCtrl
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
DataHUB
This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
dataplan
DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT
nfdi4plants_ontology
An intermediate ontology for plants used by DataPLANT to fill the ontology gap
Swate
Excel Add-In for annotation of experimental data and computational workflows.
Swate-templates
A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
Swobup
Swate DB update tool
DataPLANT's Repositories
nfdi4plants/Branding
logos, colorschemes, etc. of DataPLANT and associated applications
nfdi4plants/cwl-examples
various example cwl workflows
nfdi4plants/CWLGenerator
nfdi4plants/Hackathon_SampleRun
nfdi4plants/ARCWebAPI
Project for supplying a Common API for ARC related tasks
nfdi4plants/AnnotationPrinciples
Draft of best practices for data and workflow annotation
nfdi4plants/arc-playground
nfdi4plants/dataplant-keycloak-theme
The official DataPLANT keycloak theme
nfdi4plants/Spawn
Word Add-In to create workflow annotations from protocols.
nfdi4plants/WebHub
DataPLANT science gateway
nfdi4plants/ga-to-delegation
Generates a CWL Galaxy delegation workflow from a Galaxy workflow (.ga) file.
nfdi4plants/.github
Public info to display on the github org readme
nfdi4plants/arc-to-geo
nfdi4plants/bioconda-recipes
Conda recipes for the bioconda channel.
nfdi4plants/cwl-galaxy-parameter-parser
A tool to convert workflow parameters in the form of commandline arguments to .yml files.
nfdi4plants/dataplant-errorpages
nfdi4plants/electron-minimal
nfdi4plants/galaxy
Data intensive science for everyone.
nfdi4plants/galaxy-example-arc
nfdi4plants/galaxy-workflow-to-arc
Reads .ga files to generate a cwl tool wrapper with the same inputs as the ga file
nfdi4plants/mixed-galaxy-delegation-workflow
A CWL workflow that combines a ProteomIQon Galaxy delegation workflow with a local CWL plot workflow
nfdi4plants/multi-package-containers
Testing building mulled containers for multi-requirement tools.
nfdi4plants/nf-core-pipeline-to-arc
Reads nextflow_schema.json from a nf-core pipeline to generate a cwl tool wrapper with the same inputs
nfdi4plants/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission