DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Pinned Repositories

ARC-specification
12 7 5913
ARCCommander
Tool to manage your ARCs
Language:F#12 7 1569
ARCitect
Cross-platform app to create and manage ARCs.
Language:Vue9 5 2406
ARCtrl
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
Language:F#17 5 2838
DataHUB
This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
Language:Shell2 4 273
dataplan
DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT
Language:JavaScript4 5 5710
nfdi4plants_ontology
An intermediate ontology for plants used by DataPLANT to fill the ontology gap
Language:F#7 10 7610
Swate
Excel Add-In for annotation of experimental data and computational workflows.
Language:F#32 6 4576
Swate-templates
A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
Language:F#4 10 6218
Swobup
Swate DB update tool
Language:JavaScript5 3 111

DataPLANT's Repositories

nfdi4plants/Swobup
Swate DB update tool
Language:JavaScript5 3 111
nfdi4plants/arc-validate
Home of all the tools and libraries to create and run validation of ARCs
Language:F#4 3 602
nfdi4plants/ARCTokenization
Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens
Language:F#4 2 372
nfdi4plants/ARC_ontology
Repository containing the ARC ontology (currently only ISA-JSON model; cwl is wip (runs & workflows))
3 3 20
nfdi4plants/arc-export
Automatic building of a Docker container for exporting ARCs to the ARC.json
Language:F#2
nfdi4plants/ARC-Symposium
Language:Python2 7 00
nfdi4plants/arc-validate-package-registry
A repository of validation packages for ARCs
Language:F#2 3 524
nfdi4plants/arcCommander-docs
ArcCommander
Language:JavaScript2 4 2
nfdi4plants/user-stories
user stories for tools in the DataPLANT stack via github issues
2 1 9
nfdi4plants/actions-workflows
reusable github actions tailored for our needs
1 2 0
nfdi4plants/arc-to-invenio
Automatic building of a Docker container for converting ARCs to Invenio Metadata
Language:F#1 3 17
nfdi4plants/ARCfs
Language:Python1 2 10
nfdi4plants/archigator-backend
Archigator, a publicaton tool from Gitlab to Invenio
Language:Python1 3 70
nfdi4plants/archigator-frontend
Language:TypeScript1 2 80
nfdi4plants/CommunicationPlatform
Language:Jinja1 2 00
nfdi4plants/converters
Converters for different endpoint repositories
Language:F#1 6 5
nfdi4plants/exceljs
Excel Workbook Manager fork compatible with .NET OpenXML standard.
Language:JavaScript1 0 0
nfdi4plants/helpdesk
DataPLANT helpdesk as SPA website with server for creating MS Teams issues.
Language:F#1 2 150
nfdi4plants/teaching-materials-concept
Working repo for NFDI Cordi Abstract
Language:HTML1 5 51
nfdi4plants/invenio-test-arc
Snapshot of a small test arc to test invenio export and arc validation workflows
00
nfdi4plants/resilientDataHUB
Language:Jinja0 2 00
nfdi4plants/arc-datamap-ro-crate-profile
2 6
nfdi4plants/arcRegistry
provides a global view of ARCs and metadata search
Language:JavaScript2 33
nfdi4plants/datahub-arc-template
3 0
nfdi4plants/fastQC_quality
This is a python script for the analysis and summary of fastqc outputs. It is based on the output zip files. The script first reads the fastqc_data.txt file module by module.
Language:HTML
nfdi4plants/git-binaries
Language:HTML2 0
nfdi4plants/git-build
Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documentation/SubmittingPatches procedure for any of your improvements.
Language:C0 0
nfdi4plants/ISA-CWL-Converter
Language:F#3 0
nfdi4plants/ISADotNet-docs
Contains documentation for ISADotNet
Language:JavaScript3 01
nfdi4plants/Swate-docs
https://nfdi4plants.github.io/Swate-docs/
Language:JavaScript2 21