DataPLANT
Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.
Pinned Repositories
ARC-specification
ARCCommander
Tool to manage your ARCs
ARCitect
Cross-platform app to create and manage ARCs.
ARCtrl
Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.
DataHUB
This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.
dataplan
DataPLAN is the Data Management Plan (DMP) generator developed in DataPLANT
nfdi4plants_ontology
An intermediate ontology for plants used by DataPLANT to fill the ontology gap
Swate
Excel Add-In for annotation of experimental data and computational workflows.
Swate-templates
A collection of templates for Swate (https://github.com/nfdi4plants/Swate).
Swobup
Swate DB update tool
DataPLANT's Repositories
nfdi4plants/git-build
Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documentation/SubmittingPatches procedure for any of your improvements.
nfdi4plants/ARCTokenization
Definition of controlled vocabulary tokens and library to tokenize ARC metadata into these tokens
nfdi4plants/datahub-arc-template
nfdi4plants/helpdesk
DataPLANT helpdesk as SPA website with server for creating MS Teams issues.
nfdi4plants/ARC_ontology
Repository containing the ARC ontology (currently only ISA-JSON model; cwl is wip (runs & workflows))
nfdi4plants/web-components
DataPLANT branded web-components for diverse elements. Used in knowledgebase and main pages.
nfdi4plants/git-binaries
nfdi4plants/ISA-CWL-Converter
nfdi4plants/CommunicationPlatform
nfdi4plants/resilientDataHUB
nfdi4plants/exceljs
Excel Workbook Manager fork compatible with .NET OpenXML standard.
nfdi4plants/Swate-docs
https://nfdi4plants.github.io/Swate-docs/
nfdi4plants/teaching-materials-concept
Working repo for NFDI Cordi Abstract
nfdi4plants/webqc
Web based raw data quality control tool (prototype)
nfdi4plants/arc-to-invenio
Automatic building of a Docker container for converting ARCs to Invenio Metadata
nfdi4plants/fastQC_quality
This is a python script for the analysis and summary of fastqc outputs. It is based on the output zip files. The script first reads the fastqc_data.txt file module by module.
nfdi4plants/ARCfs
nfdi4plants/arcCommander-docs
ArcCommander
nfdi4plants/ISADotNet-docs
Contains documentation for ISADotNet
nfdi4plants/invenio-test-arc
Snapshot of a small test arc to test invenio export and arc validation workflows
nfdi4plants/arcRegistry
provides a global view of ARCs and metadata search
nfdi4plants/Nfdi4Plants.Fornax
Fornax library and template for nfdi4plants/web-components used as docs framework.
nfdi4plants/user-stories
user stories for tools in the DataPLANT stack via github issues
nfdi4plants/converters
Converters for different endpoint repositories
nfdi4plants/AnnotationPrinciples
Draft of best practices for data and workflow annotation
nfdi4plants/.github
Public info to display on the github org readme
nfdi4plants/dataplant-keycloak-theme
The official DataPLANT keycloak theme
nfdi4plants/electron-minimal
nfdi4plants/CWLGenerator
nfdi4plants/Branding
logos, colorschemes, etc. of DataPLANT and associated applications