Installation Error

[brittneykeel]

When attempting to run the "make" command is receive the error shown below. Any suggestions?

~/DWGSIM$ make
make[1]: Entering directory '/Jake/home/brittney.keel/DWGSIM/samtools'
make[2]: Entering directory '/Jake/home/brittney.keel/DWGSIM/samtools'
make[2]: Nothing to be done for 'lib'.
make[2]: Leaving directory '/Jake/home/brittney.keel/DWGSIM/samtools'
make[2]: Entering directory '/Jake/home/brittney.keel/DWGSIM/samtools/bcftools'
make[2]: Nothing to be done for 'lib'.
make[2]: Leaving directory '/Jake/home/brittney.keel/DWGSIM/samtools/bcftools'
make[2]: Entering directory '/Jake/home/brittney.keel/DWGSIM/samtools/misc'
make[2]: Nothing to be done for 'lib'.
make[2]: Leaving directory '/Jake/home/brittney.keel/DWGSIM/samtools/misc'
gcc -g -Wall -O3 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o libbam.a -Lbcftools -lbcf -lcurses -lm -lz -lpthread
make[1]: Leaving directory '/Jake/home/brittney.keel/DWGSIM/samtools'
make[1]: Entering directory '/Jake/home/brittney.keel/DWGSIM'
make[2]: Entering directory '/Jake/home/brittney.keel/DWGSIM/samtools'
make[2]: Nothing to be done for 'lib'.
make[2]: Leaving directory '/Jake/home/brittney.keel/DWGSIM/samtools'
make[2]: Entering directory '/Jake/home/brittney.keel/DWGSIM'
make[2]: Nothing to be done for 'lib'.
make[2]: Leaving directory '/Jake/home/brittney.keel/DWGSIM'
gcc -c -g -Wall -O3 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -DPACKAGE_VERSION="0.1.11" -I. src/dwgsim.c -o src/dwgsim.o
src/dwgsim.c: In function 'dwgsim_core':
src/dwgsim.c:868:36: error: 'unsignedf' undeclared (first use in this function)
(unsignedf long long)ii, j+1);
^
src/dwgsim.c:868:36: note: each undeclared identifier is reported only once for each function it appears in
src/dwgsim.c:868:46: error: expected ')' before 'long'
(unsignedf long long)ii, j+1);
^
src/dwgsim.c:868:56: error: expected ')' before 'ii'
(unsignedf long long)ii, j+1);
^
src/dwgsim.c:902:42: error: expected ')' before 'long'
(unsignedf long long)ii);
^
src/dwgsim.c:902:52: error: expected ')' before 'ii'
(unsignedf long long)ii);
^
In file included from src/dwgsim.c:45:0:
src/dwgsim.c: At top level:
src/mut.h:62:1: warning: inline function 'mut_get_ins_long_n' declared but never defined
mut_get_ins_long_n(uint8_t *ins, uint32_t *n);
^
src/mut.h:59:1: warning: inline function 'mut_get_ins_bytes' declared but never defined
mut_get_ins_bytes(int32_t n);
^
Makefile:22: recipe for target 'src/dwgsim.o' failed
make[1]: *** [src/dwgsim.o] Error 1
make[1]: Leaving directory '/Jake/home/brittney.keel/DWGSIM'
Makefile:25: recipe for target 'all-recur' failed
make: *** [all-recur] Error 1

[nh13]

Can you tell me what operating system, which version of gcc (gcc --version), and which version of dwgsim you are using (hopefully the latest from the master branch).

[nh13]

Fixed in #36. Thank-you for the report!

[brittneykeel]

Hi Nils, I actually figured out the issue a moment ago. It appears there is a typo in Lines 868 and 902 of dwgsim.c. unsignedf --> unsigned I fixed this in the code and it compiled with no problems!

…

-Brittney From: Nils Homer [mailto:notifications@github.com] Sent: Wednesday, June 14, 2017 11:25 AM To: nh13/DWGSIM <DWGSIM@noreply.github.com> Cc: Keel, Brittney - ARS <Brittney.Keel@ARS.USDA.GOV>; Author <author@noreply.github.com> Subject: Re: [nh13/DWGSIM] Installation Error (#35) Can you tell me what operating system, which version of gcc (gcc --version), and which version of dwgsim you are using (hopefully the latest from the master branch). — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#35 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AcEYkZnRZZyjw4uxQv1RzY4ROTem34ZFks5sEAlfgaJpZM4N52Rb>. This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

[nh13]

Yup, that was the fix I merged, thanks!