nh13/DWGSIM

Issues

• Error while cloning the repository.

  #89 opened 4 months ago by doglasp
  1

• build failure with gcc 14

  #88 opened 5 months ago by emollier
  0

• Installation issue

  #87 opened a year ago by tnnandi
  1

• Incorrect insertions positions with VCF

  #86 opened 2 years ago by ChristopheLegendre
  2

• Generating reads with even 10X coverage for WGS is taking too long

  #80 opened 2 years ago by tnnandi
  1

• how should I use DWGSIM to generate SNP in RNA data?

  #83 opened 2 years ago by SimoneRossi94
  1

• How is read depth distributed across the genome?

  #82 opened 2 years ago by samsonweiner
  2

• Low read depth at start and end of sequence

  #71 opened 3 years ago by nick-pestell
  8

• The coverage at the end of the sequence is close to 0

  #81 opened 2 years ago by AlsoATraveler
  1

• vcf file in out files

  #79 opened 2 years ago by lovelycatZ
  0

• Generation of reads only on the first gene of a fasta file

  #73 opened 2 years ago by SimoneRossi94
  2

• dwgsim fails to emit reads at the 3' end of a `-x` target

  #68 opened 2 years ago by yfarjoun
  2

• Contig not found error when using the -x option with multiple bed lines

  #72 opened 2 years ago by gtollefson
  2

• installation problem

  #70 opened 2 years ago by as7a5
  3

• How to generate quality score closing to NA12878.

  #69 opened 2 years ago by liyewen521
  1

• dwgsim hangs when generating more than one contig's worth of data

  #67 opened 2 years ago by yfarjoun
  1

• -o option is missing in the conda version 1.11

  #58 opened 2 years ago by dangeles
  5

• Make a release (0.1.13) and bump the version in bioconda

  #53 opened 2 years ago by nh13
  0

• Failed to generate iontorrent data

  #48 opened 2 years ago by biocyberman
  2

• -i / -d / -s outer distance ?

  #62 opened 4 years ago by jfourquet2
  3

• -e and -E option

  #61 opened 4 years ago by jfourquet2
  2

• contig parsing in mut_txt.c required sorted input

  #64 opened 4 years ago by fbattke
  1

• Option -C

  #60 opened 4 years ago by jfourquet2
  2

• No Ns into simulates reads

  #59 opened 4 years ago by jfourquet2
  1

• DWGSIM is painfully slow for long reads

  #65 opened 4 years ago by snayfach
  4

• Several Question (by, error rate)

  #57 opened 5 years ago by Freequilibrium
  0

• Enabling region of interest (-x <.bed>)

  #56 opened 5 years ago by quacksawbones
  5

• Problem with read names.

  #55 opened 5 years ago by StewartONeill
  2

• `-F` flag confusion

  #51 opened 6 years ago by multimeric
  1

• Does it support multithread mode? #Question

  #50 opened 7 years ago by afzm
  1

• -H option

  #45 opened 7 years ago by IleaHeft
  2

• The read name explanation is not clear

  #49 opened 7 years ago by bbsunchen
  1

• How to mark Quailty Score?

  #46 opened 7 years ago by studB
  1

• Issues creating variants with a vCF

  #44 opened 7 years ago by nh13
  8

• Default Illumina quality scores are too low

  #43 opened 8 years ago by niemasd
  2

• Feature to create gzipped output files instead of plaintext

  #40 opened 8 years ago by niemasd
  2

• Feature to disable the creation of each output file

  #39 opened 8 years ago by niemasd
  3

• make: *** [all-recur] Error 1 when installing DWGSIM

  #31 opened 8 years ago by phoebee-h
  6

• Installation Error

  #35 opened 8 years ago by brittneykeel
  4

• Error when cloning repo and removing -r command

  #34 opened 8 years ago
  4

• -n is not a number

  #32 opened 8 years ago
  3

• lzma.h error

  #28 opened 8 years ago
  2

• Website not working

  #27 opened 8 years ago
  3

• Some random reads have the same read ID

  #26 opened 8 years ago by JustinChu
  4

• error generating insertion

  #19 opened 8 years ago by Esbertrand
  7

• Insertions in the read and insertions reported in the VCF are off-by-one

  #22 opened 8 years ago by nh13
  1

• Mistake in documentation

  #15 opened 8 years ago by karel-brinda
  2

• Perl executables

  #16 opened 8 years ago by jerowe
  3

• Conflict between input and output for option "mutations txt file to re-create"

  #18 opened 8 years ago by namsyvo
  5

• strand information in read ids?

  #20 opened 9 years ago by RichardCorbett
  3