nicholst

nicholst's Stars

• dfsp-spirit/fsbrain

  R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

  Language:R6413

• ggseg/ggseg

  Plotting tool for brain atlases, in ggplot

  Language:R20530

• amarquand/PCNtoolkit

  Toolbox for normative modelling and spatial inference of neuroimaging data. https://pcntoolkit.readthedocs.io/en/latest/

  Language:Python11149

• jeromedockes/labelbuddy

  Text labelling desktop application

  Language:C++113

• darya-chyzhyk/confound_prediction

  Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.

  Language:Python3910

• kan-k/BSVCNN

  Bayesian Spatial Varying Coefficient Neural Network

  1

• trendscenter/coinstac-LME-VBM

  Decentralized linear mixed effects model for VBM data

  Language:Python2

• trendscenter/coinstac-LME-Freesurfer

  Decentralized linear mixed effects model for freesurfer data

  Language:Python3

• petyakindalova/PGEE_Illustration

  Language:HTML11

• TomMaullin/PythonIntro2023

  This is an introductory Python course I am running for the 2021 Health and Data Science CDT at Oxford University.

  Language:Jupyter Notebook63

• kangjian2016/PMS

  Language:R11

• linoferreira/manhattan-vector

  Make Manhattan plots as vector graphics in R with ggplot2

  Language:R61

• NISOx-BDI/SC2

  Language:Jupyter Notebook21

• dcoynel/Confidence_Sets_GLM

  Language:MATLAB1

• iamdamion/HCP-snippets

  Simple and brief walkthroughs to help grad students/new users complete basic tasks with workbench command and common HCP pipeline output files.

  152

• kangjian2016/BayesGPfit

  Bayesian Gaussian Process Regression

  Language:C++11

• kormama1/seqknockoff

  R-package: Sequential knockoffs for continuous and categorical predictors

  Language:R33

• TomMaullin/crtoolbox

  Language:R21

• NBCLab/nimare-paper

  Code for NiMARE software paper

  Language:Jupyter Notebook89

• Jfortin1/RAVEL

  Intensity normalization of structural MRIs using RAVEL

  Language:HTML2612

• satwikkansal/wtfpython

  What the f*ck Python? 😱

  Language:Python35.7k2.7k

• asoroosh/anatMRIUtils

  Collection of Shell & Python scripts for longitudinal analysis of T1-weighted MR Images

  Language:Shell2

• neuroquery/neuroquery_data

  Dataset of neuroimaging text and brain coordinates used by neuroquery.org

  56

• Remi-Gau/eCobidas

  Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

  Language:Python3722

• ohbm/OpenScienceRoom2019

  Schedule and resources from the OHBM Open Science Room: Rome 2019

  1614

• bids-standard/pybids

  Python tools for querying and manipulating BIDS datasets.

  Language:Python219122

• bids-standard/bids-specification

  Brain Imaging Data Structure (BIDS) Specification

  Language:Python273157

• cmaumet/zmeta_paper

  Language:TeX1

• BryanGuillaume/neuroCate

  Software package to adjust for unknown covariates in mass-univariate regression analyses

  Language:Matlab3

• neurostuff/NiMARE

  Coordinate- and image-based meta-analysis in Python

  Language:Python17857