Pinned Repositories
COVIDCurve
Simple Inference of age-specific IFRs for COVID-19 using a Bayesian statistical model
PGEforge
A place for holding tutorials of common software tools in Plasmodium genomic epidemiology.
bobfunctions2
A bunch of useful functions that make everyday coding easier.
discent
Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates
HMMERTIME
Infer blocks of identity by descent between samples from unphased haplotype data using an HMM
nickbrazeau.github.io
My personal website: www.nicholasbrazeau.com
polySimIBD
Structured Wright Fisher Model for Malaria Population Genetic Simulations
Thesis-Hackathon_Space_the_Final_Miptier
VivID_Seq
P. vivax in the DRC 2013-2014, NGS/PopGen Codebank
fomes
nickbrazeau's Repositories
nickbrazeau/bobfunctions2
A bunch of useful functions that make everyday coding easier.
nickbrazeau/discent
Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates
nickbrazeau/HMMERTIME
Infer blocks of identity by descent between samples from unphased haplotype data using an HMM
nickbrazeau/nickbrazeau.github.io
My personal website: www.nicholasbrazeau.com
nickbrazeau/polySimIBD
Structured Wright Fisher Model for Malaria Population Genetic Simulations
nickbrazeau/Thesis-Hackathon_Space_the_Final_Miptier
nickbrazeau/VivID_Seq
P. vivax in the DRC 2013-2014, NGS/PopGen Codebank
nickbrazeau/Sepi_Res_CaseStudy
Codebank for the EMPH Manuscript (https://doi.org/10.1093/emph/eoaa031)
nickbrazeau/acconeer-python-exploration
Acconeer Python Exploration Tool
nickbrazeau/bactopia
A flexible pipeline for complete analysis of bacterial genomes
nickbrazeau/chim_QI_magic_eightball
Simple Shiny App for Project Overdue DM QI metrics
nickbrazeau/genescaper
Allele frequency mapping and outlier detection
nickbrazeau/genescaperlite
Stripped down version of Bob's Genescaper for AMMS2022
nickbrazeau/godiscent
nickbrazeau/goHMMERTIME
nickbrazeau/goodegg
Package developing framework and helper
nickbrazeau/hmmibdr
nickbrazeau/icer
Infection composition estimation in R
nickbrazeau/jiffy_salmonella
playground salmonella jiffy outbreak
nickbrazeau/mip_bigbarcode_ehh
Extended Haplotype Heterozygosity work for "Big Barcode" Manuscript
nickbrazeau/mlrwrapSL
A simple wrapper of the SL algorithm using MLR toolbase
nickbrazeau/NFBteach
Collection of previous teaching materials
nickbrazeau/nflKOSA
nickbrazeau/OvID_EpiSeq
nickbrazeau/short-course
Model-based Inference in Ecology and Epidemiology
nickbrazeau/Space_the_Final_Miptier
nickbrazeau/starter-hugo-research-group
👥 轻松创建研究组或组织网站 Easily create a stunning Research Group, Team, or Business Website with no-code
nickbrazeau/template
A template for data analysis projects structured as R packages (or not)
nickbrazeau/vcfdo
Some tools for processing and annotating VCF files, with focus on Plasmodium spp
nickbrazeau/VivID_Epi
P. vivax in the DRC 2013-2014, Epi Codebank