This is the repository that details the Extended Haplotype Heterozygosity work from the Verity R, Aydemir O, Brazeau NF et al. 2019 manuscript entitled The Impact of Antimalarial Resistance on the Genetic Structure of Plasmodium falciparum in the DRC (PMID: TBD).
Please use the make script to reproduce the analysis from the manuscript (as well as generate the figures) relating to the EHH work.