nickhsmith

bioconda-recipes

Conda recipes for the bioconda channel.

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

drop_demo_data

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

AMLnetwork

AML network

bimm185

bimm 185 code and files

bioconda-recipes

Conda recipes for the bioconda channel.

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

ECO

Matlab implementation of the ECO tracker.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

nickhsmith/ECO

Matlab implementation of the ECO tracker.

nickhsmith/AMLnetwork

AML network

nickhsmith/bimm185

bimm 185 code and files

nickhsmith/bioconda-recipes

Conda recipes for the bioconda channel.

nickhsmith/drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

nickhsmith/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

nickhsmith/FRASER

FRASER - Find RAre Splicing Events in RNA-seq

nickhsmith/iC10

:exclamation: This is a read-only mirror of the CRAN R package repository. iC10 — A Copy Number and Expression-Based Classifier for Breast Tumours

nickhsmith/markdown-docs

GitHub action for generating markdown docs for python code

nickhsmith/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nickhsmith/nf-co.re

Code and files for the main nf-core website.

nickhsmith/OUTRIDER

OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

nickhsmith/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

nickhsmith/tMAE