Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
elfi
ELFI - Engine for Likelihood-Free Inference
genoPlotR
:exclamation: This is a read-only mirror of the CRAN R package repository. genoPlotR — Plot Publication-Grade Gene and Genome Maps. Homepage: http://genoplotr.r-forge.r-project.org/
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
maelaAntigens
R markdown document, and associated code, used for the analysis of the IgG immune response to pneumococcal proteins
mgeTransformation
Model of horizontal DNA transfer within a simple bacterial community
multilocusNFDS
pbp_AMR_prediction
Research code for a project aimed at improving our understanding of the genetic determinants of antibiotic resistance in Streptococcus pneumoniae
pneumo-cgmlst
Core genome COGs for S. pneumoniae from Corander et al 2017 Nat. Ecol. Evol. 1:1950-60
progressionEstimation
R package for the estimation of microbial progression rates
nickjcroucher's Repositories
nickjcroucher/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
nickjcroucher/multilocusNFDS
nickjcroucher/pneumo-cgmlst
Core genome COGs for S. pneumoniae from Corander et al 2017 Nat. Ecol. Evol. 1:1950-60
nickjcroucher/progressionEstimation
R package for the estimation of microbial progression rates
nickjcroucher/bioconda-recipes
Conda recipes for the bioconda channel.
nickjcroucher/elfi
ELFI - Engine for Likelihood-Free Inference
nickjcroucher/genoPlotR
:exclamation: This is a read-only mirror of the CRAN R package repository. genoPlotR — Plot Publication-Grade Gene and Genome Maps. Homepage: http://genoplotr.r-forge.r-project.org/
nickjcroucher/maelaAntigens
R markdown document, and associated code, used for the analysis of the IgG immune response to pneumococcal proteins
nickjcroucher/mgeTransformation
Model of horizontal DNA transfer within a simple bacterial community
nickjcroucher/pbp_AMR_prediction
Research code for a project aimed at improving our understanding of the genetic determinants of antibiotic resistance in Streptococcus pneumoniae
nickjcroucher/pbp_tpd_extraction
nickjcroucher/pp-sketchlib
Library of sketching functions used by PopPUNK
nickjcroucher/PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
nickjcroucher/prophage_transformation_analysis
nickjcroucher/RCandy
RCandy: an R package for visualising homologous recombination events in bacterial genomes
nickjcroucher/recognise
Precise inference of bacterial recombinations
nickjcroucher/ska.rust
Split k-mer analysis – version 2
nickjcroucher/Strep_Project2_Hipercow
nickjcroucher/transposonDynamics