!! First fork this repo so you can push your changes !!
pip install -r requirements.txt
This repo is a template for the competition. You need to write your pytorch model in src/model.py and the training loop in train.py.
- Dataloaders: The function
get_dataloaders()will construct a training and validation dataloader with the specified batch size, maximum sequence length and dataset size. Each batch is a dictionary withreference,sequence, andstructureelements - Template model: The class
RNA_netembeds the integer encoded sequence into the sequence and matrix representations, and should be completed to crete a secondary structure model You can use some utils inutil.pyfor general logging and metrics - Metrics: we provide functions to compute the Precision, Recall and F1 score metrics in
util.py - Plotting: we provide a function to save a plot of a structure prediction compared to its ground truth in
util.py