Pinned Repositories
CAS-EXPAR-Designer
A tool for designing oligo sequences for a CAS-EXPAR reaction using machine learning to predict EXPAR performance.
OT-2-WGene-Porotocols
GUI for designing protocols for production of SARS-CoV-2 WGene RT Detection kit.
Wiener-Fold
A pipeline for evaluating EXPAR performance of random sequences to be used in a doble template strategy.
Customising-your-models-with-TensorFlow-2
Capstone project of the course "Customising your models with TensorFlow 2" (Imperial Collage London, in coursera.com). A RNN for translating German to English
mabR-proteomics
Procesamiento y resultados del análisis por proteómica de la mutante mabRi realizado para mi tesina
FinAl-ReSi
Find and Align Restriction Sites - Pipeline to find specific restriction/nicking sites on a target and assess conservation among strains/variants
embeddings_app
Dash app to see the tSNE projection of embeddings of RNA secondary structures
getSequenceInfo
A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
getting_started_with_Tensorflow2.0
Capstone project of the course "Getting started with TensorFlow 2" (Imperial Collage London, in coursera.com). A CNN for image classification of MNIST dataset.
MultipleOligoOptimizer
A pipeline for designing oligos for Ampliseq, minimizing dimer formation and non-specific amplification
nicoaira's Repositories
nicoaira/embeddings_app
Dash app to see the tSNE projection of embeddings of RNA secondary structures
nicoaira/StrusiNet2
A Siamese Deep Neural Network to compute RNA secondary structure embeddings
nicoaira/nextEpoch_structure_competition
nicoaira/scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
nicoaira/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
nicoaira/RNA-StruSiNet
A Siamese Deep Neural Network to assess the similarity between RNA secondary structures
nicoaira/seekr-mm
A library for counting small kmer and mm-kmers frequencies in nucleotide sequences.
nicoaira/getSequenceInfo
A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
nicoaira/MultipleOligoOptimizer
A pipeline for designing oligos for Ampliseq, minimizing dimer formation and non-specific amplification
nicoaira/FinAl-ReSi
Find and Align Restriction Sites - Pipeline to find specific restriction/nicking sites on a target and assess conservation among strains/variants
nicoaira/CAS-EXPAR-Designer
A tool for designing oligo sequences for a CAS-EXPAR reaction using machine learning to predict EXPAR performance.
nicoaira/TriggerGen
A tool for finding target regions for our Trigger X generation strategy
nicoaira/mabR-proteomics
Procesamiento y resultados del análisis por proteómica de la mutante mabRi realizado para mi tesina
nicoaira/OT-2-WGene-Porotocols
GUI for designing protocols for production of SARS-CoV-2 WGene RT Detection kit.
nicoaira/Wiener-Fold
A pipeline for evaluating EXPAR performance of random sequences to be used in a doble template strategy.
nicoaira/Customising-your-models-with-TensorFlow-2
Capstone project of the course "Customising your models with TensorFlow 2" (Imperial Collage London, in coursera.com). A RNN for translating German to English
nicoaira/getting_started_with_Tensorflow2.0
Capstone project of the course "Getting started with TensorFlow 2" (Imperial Collage London, in coursera.com). A CNN for image classification of MNIST dataset.