Pinned Repositories
bamUtil
bedtools-pairedBamToBed12
A powerful toolset for genome arithmetic.
BreastCancerSomaticMutation_vs_ChromatinInteraction
Deorphanizing gene-distal non-coding cancer-associated somatic mutations with chromatin interactions in breast cancer
CAGEscan-Clustering
Create CAGEscan clusters from CAGE paired-end reads
d3plus
Visualization utility
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
dev-setup
Mac OS X development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.
dockerize
Utility to simplify running applications in docker containers
effective-computing
Effective Computing—Resources for Computational Biologists
zenbu-docker
nicolas-bertin's Repositories
nicolas-bertin/CAGEscan-Clustering
Create CAGEscan clusters from CAGE paired-end reads
nicolas-bertin/bedtools-pairedBamToBed12
A powerful toolset for genome arithmetic.
nicolas-bertin/bamUtil
nicolas-bertin/BreastCancerSomaticMutation_vs_ChromatinInteraction
Deorphanizing gene-distal non-coding cancer-associated somatic mutations with chromatin interactions in breast cancer
nicolas-bertin/d3plus
Visualization utility
nicolas-bertin/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
nicolas-bertin/dev-setup
Mac OS X development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.
nicolas-bertin/dockerize
Utility to simplify running applications in docker containers
nicolas-bertin/effective-computing
Effective Computing—Resources for Computational Biologists
nicolas-bertin/zenbu-docker
nicolas-bertin/gnomadjs
JavaScript tools for exploring variant data
nicolas-bertin/hail-on-EMR
EMR cluster creation and Hail 0.2 installation
nicolas-bertin/imputationserver
Michigan Imputation Server: Next-generation genotype imputation service and methods
nicolas-bertin/lamp
LAMP base docker image
nicolas-bertin/libStatGen
Useful set of classes for creating statistical genetic programs.
nicolas-bertin/rpd-sg10k-grch38-gatk4-gvcf-freebayes-vcf
Main genome analytics workflow powering the production analysis of WGS samples for the Singapore NPM Program Phase 1A (AKA SG10K Health)