nicolasDelhomme

arabidopsis-nutrition-tor

Arabidopsis-nutrition-tor

aspen-seasonal-senescence

aspen-seasonal-senescence

BioQAExample

Biological Quality Assessment Example

DifferentialExpressionExample

An example of a Differential Expression analysis

PreprocessingJournalClub

HTS preprocessing journal club

presentation-template

Reveal template

project-template

RNA-Seq-workflow-Differential-Expression

This is an adaptation of Charlotte Soneson's RNA-Seq teaching material, originally given at the EBI in April 2019

scRNA-Seq-Exercise

scRNA-Seq Exercise

nicolasDelhomme/project-template

nicolasDelhomme/RNA-Seq-workflow-Differential-Expression

This is an adaptation of Charlotte Soneson's RNA-Seq teaching material, originally given at the EBI in April 2019

nicolasDelhomme/aspen-seasonal-senescence

aspen-seasonal-senescence

nicolasDelhomme/BioQAExample

Biological Quality Assessment Example

nicolasDelhomme/fungal-trans

A Snakemake workflow for fungal metatranscriptomics

nicolasDelhomme/PreprocessingJournalClub

HTS preprocessing journal club

nicolasDelhomme/scRNA-Seq-Exercise

scRNA-Seq Exercise

nicolasDelhomme/Welcome

High Throughput Sequencing Introduction Lecture

nicolasDelhomme/arabidopsis-aphids

PECTIN ACETYLESTERASE9 affects the transcriptome and metabolome and delays aphid feeding

nicolasDelhomme/arabidopsis-prn2-hub2

Arabidopsis prn2 hub2 mutants analysis

nicolasDelhomme/Berlin2022

nicolasDelhomme/docker-light-baseimage

A container base image to build reliable single or multiprocess images quickly 🐳✨🌴

nicolasDelhomme/docker-openldap

OpenLDAP container image 🐳🌴

nicolasDelhomme/fg-course

Functional Genomics course website

nicolasDelhomme/ForskarFredag2021

A shiny app for Forskar Fredag (Researcher's night) 2021

nicolasDelhomme/GeneNetworksExample

Introduction to gene networks and example usage of seidr, a tool for ensemble gene network construction, manipulation and analysis

nicolasDelhomme/loafer

Node.js/Express.js front end for Gofer2

nicolasDelhomme/nf-radseq

NextFlow pipeline for RAD-Seq analyses

nicolasDelhomme/PLncPRO

Prediction of lncRNAs using machine learning (Singh et. al NAR 2017)

nicolasDelhomme/poplarCambium

nicolasDelhomme/PoplarFT

FLOWERING LOCUS T Paralogs Control the Annual Growth Cycle in Populus Trees

nicolasDelhomme/riboSeqPipeline

RiboSeq pipeline

nicolasDelhomme/rtp

nicolasDelhomme/scRNA-Seq

scRNA-Seq lecture

nicolasDelhomme/SeedTransNet-seidr

Seidr analysis for SeedTransNet

nicolasDelhomme/SLUBI2022

nicolasDelhomme/spruce-cone-setting

Here, we utilize the early cone-setting acrocona mutant to study reproductive phase change in the conifer Picea abies; a representative of the gymnosperm lineage. The acrocona mutant frequently initiates cone-like structures, called transition shoots, in positions where wild-type P. abies always produces vegetative shoots. By sequence analysis of mRNA and microRNA transcripts, we demonstrate that a member of the SQUAMOSA BINDING PROTEIN-LIKE (SPL) gene family, PaSPL1, is active in reproductive meristems, whereas two putative negative regulators of PaSPL1, microRNA156 and the conifer specific miR529, both are upregulated in vegetative meristems and transition shoots. By allele-specific assembly, we identify a mutation in the miRNA binding-site of the acrocona PaSPL1 allele. Data presented suggest that the mutation renders the acrocona allele micro-RNA resistant. Finally, by genotyping a segregating population of inbred acrocona trees, we show a clear co-segregation between the early cone-setting phenotype and trees homozygous for the acrocona mutation.

nicolasDelhomme/spruce-pine-light

Global gene expression analysis in etiolated and de-etiolated seedlings in conifers

nicolasDelhomme/spruce-wood-laser-microdissection

Blokhina et al., Plant Physiology, 2019

nicolasDelhomme/testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.