/DifferentialExpressionExample

An example of a Differential Expression analysis

Primary LanguageHTMLGNU General Public License v3.0GPL-3.0

Differential Expression example

Set up

  1. Create a new project in RStudio to clone the GitHub repository: https://github.com/nicolasDelhomme/DifferentialExpressionExample.git

  2. Create a link to the data and to the persistent storage

ln -s ../raw_data data
ln -s ../persistent analysis
  1. Populate the UPSCb-common submodule (RStudio does not retrieve submodules by default). In the RStudio terminal do:
git submodule init
git submodule update --remote
cd UPSCb-common
git submodule init
#git submodule update --remote
git submodule update
cd ..

  1. Copy the DifferentialExpression template from UPSCb-common/templates/R to src/R

  2. Open your copy of DifferentialExpression.R