The fmrif_tools package contains a set of python utilities to aid in the processing and manipulation of scanner data stored in the Gold and Oxygen archive systems at the Functional Magnetic Resonance Imaging Facility (FMRIF) at the National Institutes of Health. The utilities run under either Python 2.7+ or Python 3.5+.
- oxy2bids - A utility to convert DICOM scans downloaded from Gold and Oxygen into a BIDS compatible directory directory structure
- biounpack - A utility to extract physiological recording data from biopack files and save it as independent respiratory, cardiac, and trigger 1D data files.
- dcmexplorer - A utility to parse DICOM files from Oxygen and Gold servers and explore their tags based on a user-provided DICOM tag specification file.
- bidsmapper - A utility to generate a DICOM to BIDS mapping file from a set of Oxygen/Gold archives based on user-provided heuristics and DICOM tags.
For usage instructions, please read the full documentation at:
http://fmrif-tools.readthedocs.io/en/latest/
For more information, or assistance, contact the lead developer at:
- jan.varada -at- nih -dot- gov
Please submit any bug reports or feature requests at: Report bugs or Feature Requests