This project contains the code to preprocess OME-TIFF image stacks from Mother machine experiments before analysis with MoMA (Mother Machine Analyzer).
MoMA (Mother Machine Analyzer) loads and processes each growthlane of a Mother machine experiment separately. The software in this repository preprocesses the full-frame OME-TIFF stacks, which are recorded using MicroManager during Mother machine experiments, and splits them into separate growthlanes.
MoMA preprocessing is available as Docker image. It is recommended that you use the Docker image for quick and easy setup as described here.
Alternatively, you can look at the Dockerfile in this repository, if you want to understand how to set up MoMA preprocessing without container.
Usage information is available here and in the MoMA tutorial.