nina2727

nina2727's Stars

• angelettilab/scMouseBcellFlu

  Language:R177

• Genentech/Absolve

  Absolve antibody variable domain sequence analysis

  Language:C++168

• BOSUKE/stock_and_python_book

  「株とPython ─ 自作プログラムでお金儲けを目指す本」 サンプルコードなど

  Language:Python10833

• zhangzlab/covid_balf

  R script for the covid balf data analysis

  Language:R6335

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k594

• deweylab/CellO

  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

  Language:Jupyter Notebook6112

• hemberg-lab/scmap

  A tool for unsupervised projection of single cell RNA-seq data

  Language:R8811

• Irrationone/cellassign

  Automated, probabilistic assignment of cell types in scRNA-seq data

  Language:R19281

• FRED-2/OptiType

  Precision HLA typing from next-generation sequencing data

  Language:Python18374

• ZJUFanLab/scCATCH

  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

  Language:R21039

• dviraran/SingleR

  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

  Language:HTML26698

• SingleR-inc/celldex

  Collection of cell type reference datasets.

  Language:R447

• genome-sci/pags_workshop_2019

  先進ゲノム支援中級者講習会2019

  Language:Jupyter Notebook97

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.2k598

• amcdavid/CellaRepertorium

  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)

  Language:C++144

• scverse/scirpy

  A scanpy extension to analyse single-cell TCR and BCR data.

  Language:Python21734

• immunomind/immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  Language:R30665

• antigenomics/vdjdb-db

  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

  Language:Groovy13127

• SingleR-inc/SingleR

  Clone of the Bioconductor repository for the SingleR package.

  Language:R17319

• SCCAF/sccaf

  Single-Cell Clustering Assessment Framework

  Language:Jupyter Notebook9019

• cole-trapnell-lab/monocle3

  Language:R330101

• cole-trapnell-lab/garnett

  Automated cell type classification

  Language:R10425

• mafeiyang/ACTINN

  Language:Python3521

• ekalinin/github-markdown-toc

  Easy TOC creation for GitHub README.md

  Language:Shell3.2k2.7k

• mptouzel/bayes_diffexpr

  code associated with publication: Inferring the immune response from repertoire sequencingPuelma Touzel, M PLoS Comp Bio 2020

  Language:Jupyter Notebook5

• japan-medical-ai/medical-ai-course-materials

  メディカルAIコース オンライン講義資料

  Language:Jupyter Notebook23857

• Russel88/DAtest

  Compare different differential abundance and expression methods

  Language:R499

• romanhaa/Cerebro

  Visualization of scRNA-seq data.

  Language:HTML9319

• line/line-bot-sdk-java

  LINE Messaging API SDK for Java

  Language:Java606945

• ccxt/ccxt

  A JavaScript / TypeScript / Python / C# / PHP cryptocurrency trading API with support for more than 100 bitcoin/altcoin exchanges

  Language:Python32.6k7.5k